Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011191.2 Cucumis melo HOM05D006939 ORTHO05D008616 1.3e-191 672.9 342 100.0
CsaV3_2G031410 Cucumis sativus L. HOM05D006939 ORTHO05D008616 1.3e-188 662.9 342 98.2
ClCG08G012690 Citrullus lanatus HOM05D006939 ORTHO05D008616 7.2e-171 604.0 342 91.5
Sed0018205 Sechium edule HOM05D006939 ORTHO05D008616 2.5e-163 578.9 339 87.3
CiPaw.07G213000 Carya illinoinensis HOM05D006939 ORTHO05D008616 1.6e-146 523.1 339 79.4
CSS0002269 Camellia sinensis var. sinensis HOM05D006939 ORTHO05D008616 5.2e-145 518.1 318 83.0
QL12p025112 Quercus lobata HOM05D006939 ORTHO05D008616 6.4e-143 511.1 355 75.8
Ciclev10008814m.g Citrus clementina HOM05D006939 ORTHO05D008616 1.2e-141 506.9 356 74.2
Dinv25196 Davidia involucrata HOM05D006939 ORTHO05D008616 1.2e-141 506.9 350 74.9
Manes.03G003600 Manihot esculenta HOM05D006939 ORTHO05D008616 2.7e-141 505.8 353 73.4
Lj1g0013260 Lotus japonicus HOM05D006939 ORTHO05D008616 3.0e-140 502.3 354 73.4
Ca_15668_v3 Cicer arietinum L. HOM05D006939 ORTHO05D008616 6.6e-140 501.1 355 73.5
Atru.chr7.2637 Acer truncatum HOM05D006939 ORTHO05D008616 8.6e-140 500.7 363 70.8
TWI63G0558 Tripterygium wilfordii HOM05D006939 ORTHO05D008616 4.3e-139 498.4 338 74.9
TAR369G0747 Trochodendron aralioides HOM05D006939 ORTHO05D008616 4.3e-139 498.4 355 73.8
Glyma.04G075200 Glycine max HOM05D006939 ORTHO05D008616 7.3e-139 497.7 357 73.1
arahy.Tifrunner.gnm1.ann1.8I4SMW Arachis hypogaea HOM05D006939 ORTHO05D008616 1.6e-138 496.5 337 76.6
Glyma.06G076400 Glycine max HOM05D006939 ORTHO05D008616 2.8e-138 495.7 357 72.5
arahy.Tifrunner.gnm1.ann1.WZEV1S Arachis hypogaea HOM05D006939 ORTHO05D008616 2.4e-137 492.7 337 76.3
Thecc.09G006900 Theobroma cacao HOM05D006939 ORTHO05D008616 2.4e-137 492.7 308 79.5
VMungo1309G0618 Vigna mungo HOM05D006939 ORTHO05D008616 2.4e-137 492.7 357 71.7
Lj8C13T0 Lonicera japonica HOM05D006939 ORTHO05D008616 5.2e-137 491.5 331 76.1
TPR.G12361 Trifolium pratense HOM05D006939 ORTHO05D008616 5.2e-137 491.5 337 72.4
Nn8g40552 Nelumbo nucifera HOM05D006939 ORTHO05D008616 6.4e-135 484.6 356 71.1
Gorai.009G068000 Gossypium raimondii HOM05D006939 ORTHO05D008616 1.9e-134 483.0 310 78.4
GSVIVG01035522001 Vitis vinifera HOM05D006939 ORTHO05D008616 1.9e-134 483.0 310 79.0
Duzib168G0459 Durio zibethinus HOM05D006939 ORTHO05D008616 2.4e-134 482.6 310 78.1
Gohir.D05G067200 Gossypium hirsutum HOM05D006939 ORTHO05D008616 4.1e-134 481.9 310 78.1
Gohir.A05G064600 Gossypium hirsutum HOM05D006939 ORTHO05D008616 1.2e-133 480.3 310 79.4
Lalb_Chr08g0243571 Lupinus albus HOM05D006939 ORTHO05D008616 2.7e-133 479.2 336 74.4
MBI16_g38081_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 3.5e-133 478.8 357 71.7
Sc09g0010200 Simmondsia chinensis HOM05D006939 ORTHO05D008616 6.0e-133 478.0 322 75.8
Medtr3g108805 Medicago truncatula HOM05D006939 ORTHO05D008616 1.7e-132 476.5 356 69.9
PGSC0003DMG400001838 Solanum tuberosum HOM05D006939 ORTHO05D008616 1.5e-131 473.4 312 77.6
Actinidia06924 Actinidia chinensis HOM05D006939 ORTHO05D008616 2.8e-130 469.2 314 78.3
CAN.G1445.9 Capsicum annuum HOM05D006939 ORTHO05D008616 1.1e-129 467.2 312 76.3
CANSAT25G1759 Cannabis sativa HOM05D006939 ORTHO05D008616 4.0e-129 465.3 374 67.6
Cc02_g39540 Coffea canephora HOM05D006939 ORTHO05D008616 1.5e-128 463.4 326 74.8
Sopen08g026100 Solanum pennellii HOM05D006939 ORTHO05D008616 2.0e-128 463.0 312 76.0
Potri.018G005900 Populus trichocarpa HOM05D006939 ORTHO05D008616 3.4e-128 462.2 336 69.9
Hund19405 Selenicereus undatus HOM05D006939 ORTHO05D008616 3.4e-128 462.2 330 72.4
Sabra18G0011600 Salix brachista HOM05D006939 ORTHO05D008616 5.8e-128 461.5 343 68.5
Sabra18G0014100 Salix brachista HOM05D006939 ORTHO05D008616 5.8e-128 461.5 343 68.5
AUR62009066 Chenopodium quinoa HOM05D006939 ORTHO05D008616 7.6e-128 461.1 329 72.9
Eucgr.C04007 Eucalyptus grandis HOM05D006939 ORTHO05D008616 7.6e-128 461.1 323 74.0
Solyc08g077520.3 Solanum lycopersicum HOM05D006939 ORTHO05D008616 7.6e-128 461.1 312 75.6
THA.LOC104814976 Tarenaya hassleriana HOM05D006939 ORTHO05D008616 3.8e-127 458.8 315 73.3
PGR044G1028 Punica granatum HOM05D006939 ORTHO05D008616 1.4e-126 456.8 313 74.1
Prupe.1G460400 Prunus persica HOM05D006939 ORTHO05D008616 4.6e-125 451.8 352 67.3
HanXRQChr12g0379171 Helianthus annuus HOM05D006939 ORTHO05D008616 7.8e-125 451.1 316 73.7
SalBow7G0985 Salvia bowleyana HOM05D006939 ORTHO05D008616 7.8e-125 451.1 335 70.1
Migut.M00074 Erythranthe guttata HOM05D006939 ORTHO05D008616 1.3e-124 450.3 312 74.0
MD15G1108100 Malus domestica HOM05D006939 ORTHO05D008616 1.5e-123 446.8 346 67.3
ECA240G2907 Erigeron canadensis HOM05D006939 ORTHO05D008616 5.6e-123 444.9 310 73.5
Aqoxy7G02987 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 2.1e-122 443.0 310 72.3
CDE02G0224 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 2.8e-122 442.6 343 67.1
HPP92_017403 Vanilla planifolia HOM05D006939 ORTHO05D008616 1.4e-121 440.3 314 70.7
Peaxi162Scf00084g00007 Petunia axillaris HOM05D006939 ORTHO05D008616 1.8e-121 439.9 294 77.2
PSO063G0559 Papaver somniferum HOM05D006939 ORTHO05D008616 2.4e-121 439.5 309 71.2
PSO170G5391 Papaver somniferum HOM05D006939 ORTHO05D008616 2.4e-121 439.5 309 71.2
Psat5g025040 Pisum sativum HOM05D006939 ORTHO05D008616 2.4e-121 439.5 304 74.7
AUR62020602 Chenopodium quinoa HOM05D006939 ORTHO05D008616 2.6e-120 436.0 312 72.8
CARHR202610 Cardamine hirsuta HOM05D006939 ORTHO05D008616 4.5e-120 435.3 313 70.0
RcHm_v2.0_Chr6g0304951 Rosa chinensis HOM05D006939 ORTHO05D008616 2.9e-119 432.6 357 64.1
Sp6g32750 Schrenkiella parvula HOM05D006939 ORTHO05D008616 6.4e-119 431.4 311 70.1
FvH4_2g36790 Fragaria vesca HOM05D006939 ORTHO05D008616 1.4e-118 430.3 353 64.0
Oeu040447.1 Olea europaea HOM05D006939 ORTHO05D008616 2.4e-118 429.5 279 74.9
vmacro04127 Vaccinium macrocarpon HOM05D006939 ORTHO05D008616 4.2e-118 428.7 265 81.5
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 5.4e-118 428.3 408 58.8
A03p04710 Brassica napus HOM05D006939 ORTHO05D008616 7.1e-118 427.9 310 69.0
C03p05420 Brassica napus HOM05D006939 ORTHO05D008616 9.3e-118 427.6 310 69.7
MSTRG.14901 Avicennia marina HOM05D006939 ORTHO05D008616 1.2e-117 427.2 312 68.6
BcaB01g05506 Brassica carinata HOM05D006939 ORTHO05D008616 7.9e-117 424.5 310 69.4
BraA03t09811Z Brassica rapa HOM05D006939 ORTHO05D008616 2.3e-116 422.9 310 69.0
BcaB01g06272 Brassica carinata HOM05D006939 ORTHO05D008616 3.0e-116 422.5 311 68.2
FAN20G0593 Fragaria x ananassa HOM05D006939 ORTHO05D008616 8.7e-116 421.0 357 63.0
FAN27G1343 Fragaria x ananassa HOM05D006939 ORTHO05D008616 2.5e-115 419.5 357 63.3
Lj8C69T1 Lonicera japonica HOM05D006939 ORTHO05D008616 4.3e-115 418.7 331 68.0
Carub.0006s0918 Capsella rubella HOM05D006939 ORTHO05D008616 4.0e-113 412.1 311 68.2
Cfa013266 Carpinus fangiana HOM05D006939 ORTHO05D008616 4.0e-113 412.1 276 77.2
DCAR_015445 Daucus carota HOM05D006939 ORTHO05D008616 9.0e-113 411.0 310 67.4
Aa31LG3G16420 Aethionema arabicum HOM05D006939 ORTHO05D008616 1.5e-112 410.2 319 65.8
CiPaw.08G019500 Carya illinoinensis HOM05D006939 ORTHO05D008616 1.5e-112 410.2 310 70.6
AL6G21250 Arabidopsis lyrata HOM05D006939 ORTHO05D008616 3.4e-112 409.1 315 65.1
DCAR_026761 Daucus carota HOM05D006939 ORTHO05D008616 3.8e-111 405.6 317 64.7
SGA_v2.0_scaffold73G24476 Striga asiatica HOM05D006939 ORTHO05D008616 1.1e-110 404.1 331 65.9
unitig_61.g26486 Utricularia gibba HOM05D006939 ORTHO05D008616 1.4e-110 403.7 312 64.7
EL10Ac2g03752 Beta vulgaris HOM05D006939 ORTHO05D008616 7.1e-110 401.4 323 65.9
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 6.0e-109 398.3 293 69.3
Nitab4.5_0006135g0050 Nicotiana tabacum HOM05D006939 ORTHO05D008616 4.3e-107 392.1 284 72.9
Zm00001eb048210 Zea mays HOM05D006939 ORTHO05D008616 5.6e-107 391.7 335 59.1
ATR0580G399 Amborella trichopoda HOM05D006939 ORTHO05D008616 7.4e-107 391.3 357 58.0
Haze_21731 Corylus avellana HOM05D006939 ORTHO05D008616 3.7e-106 389.0 242 80.6
FAN15G1628 Fragaria x ananassa HOM05D006939 ORTHO05D008616 6.2e-106 388.3 353 60.1
Thhalv10014111m.g Eutrema salsugineum HOM05D006939 ORTHO05D008616 1.4e-105 387.1 317 64.4
SGA_v2.0_scaffold49G18392 Striga asiatica HOM05D002257 ORTHO05D008616 1.0e-103 380.9 331 61.0
Nitab4.5_0001255g0030 Nicotiana tabacum HOM05D006939 ORTHO05D008616 1.3e-100 370.5 285 69.5
EL10Ac5g10928 Beta vulgaris HOM05D006939 ORTHO05D008616 1.1e-99 367.5 266 69.5
AT5G10710 Arabidopsis thaliana HOM05D006939 ORTHO05D008616 2.0e-96 356.7 315 59.7
Lsat_1_v5_gn_5_46220 Lactuca sativa HOM05D006939 ORTHO05D008616 7.4e-91 338.2 315 62.2
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 2.6e-83 313.2 188 80.3
SHI21120 Sapria himalayana HOM05D006939 ORTHO05D008616 8.6e-55 218.4 247 53.0
MD08G1128700 Malus domestica HOM05D006939 ORTHO05D008616 5.0e-47 192.6 233 50.2
Aqoxy3G02235 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.0e-44 184.9 140 68.6
Mapoly0042s0046 Marchantia polymorpha HOM05D006939 ORTHO05D008616 2.0e-43 180.6 309 37.2
Pp3c6_9310 Physcomitrium patens HOM05D006939 ORTHO05D008616 2.2e-42 177.2 317 34.4
AagrBONN_evm.TU.Sc2ySwM_228.595 Anthoceros agrestis HOM05D006939 ORTHO05D008616 2.9e-42 176.8 324 37.0
BcaB01g06274 Brassica carinata HOM05D006939 ORTHO05D008616 9.2e-41 171.8 138 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1051 Anthoceros agrestis HOM05D006939 ORTHO05D008616 4.6e-40 169.5 305 35.4
SMO119G0385 Selaginella moellendorffii HOM05D006939 ORTHO05D008616 6.0e-40 169.1 301 34.6
Pp3c5_16590 Physcomitrium patens HOM05D006939 ORTHO05D008616 1.2e-37 161.4 316 31.6
Aqoxy1G02501 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.1e-36 158.3 245 43.7
MBI16_g27300_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 4.9e-34 149.4 221 45.7
CDE05G2180 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 4.0e-28 129.8 170 50.0
COL.COLO4_19037 Corchorus olitorius HOM05D000039 ORTHO05D000870 1.0e-23 115.2 142 50.7
Os04g0284100 Oryza sativa ssp. japonica HOM05D006939 ORTHO05D008616 1.0e-23 115.2 72 77.8


User provided reference genes

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