Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011188.2 Cucumis melo HOM05D019337 ORTHO05D009846 9.7e-232 806.6 452 100.0
CsaV3_2G031380 Cucumis sativus L. HOM05D019337 ORTHO05D009846 1.5e-195 686.4 463 86.6
ClCG08G012670 Citrullus lanatus HOM05D019337 ORTHO05D009846 1.7e-164 583.2 463 76.2
Sed0008235 Sechium edule HOM05D019337 ORTHO05D009846 1.6e-112 410.6 453 60.0
Sed0003431 Sechium edule HOM05D019337 ORTHO05D009846 9.1e-105 384.8 460 59.6
Ciclev10010613m.g Citrus clementina HOM05D014278 ORTHO05D009846 3.8e-18 97.1 501 30.3
TWI32G0873 Tripterygium wilfordii HOM05D013263 ORTHO05D009846 4.2e-17 93.6 422 32.9
Potri.006G274600 Populus trichocarpa HOM05D014278 ORTHO05D009846 1.4e-15 88.6 487 30.2
Atru.chr7.2642 Acer truncatum HOM05D019337 ORTHO05D009846 5.1e-15 86.7 496 30.2
Sabra18G0011200 Salix brachista HOM05D014278 ORTHO05D009846 7.4e-14 82.8 497 29.2
Sabra18G0013600 Salix brachista HOM05D014278 ORTHO05D009846 1.3e-13 82.0 507 29.2
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 1.7e-13 81.6 456 29.6
Lalb_Chr23g0269121 Lupinus albus HOM05D013197 ORTHO05D012811 2.2e-13 81.3 521 28.8
MD15G1107800 Malus domestica HOM05D013263 ORTHO05D009846 2.2e-13 81.3 460 31.1
Manes.16G135600 Manihot esculenta HOM05D014278 ORTHO05D009846 2.2e-13 81.3 437 30.0
Prupe.1G460100 Prunus persica HOM05D013263 ORTHO05D009846 2.8e-13 80.9 439 32.3
Cfa013269 Carpinus fangiana HOM05D014278 ORTHO05D009846 4.8e-13 80.1 509 31.8
Oeu018569.1 Olea europaea HOM05D009522 ORTHO05D009846 1.4e-12 78.6 421 30.4
CiPaw.07G212500 Carya illinoinensis HOM05D013263 ORTHO05D009846 1.8e-12 78.2 414 29.7
FAN27G1111 Fragaria x ananassa HOM05D013263 ORTHO05D009846 2.4e-12 77.8 405 30.9
Duzib168G1354 Durio zibethinus HOM05D019025 ORTHO05D009846 3.1e-12 77.4 440 30.7
FvH4_2g36751 Fragaria vesca HOM05D013263 ORTHO05D009846 3.1e-12 77.4 405 30.9
Cpa.g.sc23.16 Carica papaya HOM05D013263 ORTHO05D009846 4.1e-12 77.0 48 75.0
TWI34G1417 Tripterygium wilfordii HOM05D014278 ORTHO05D009846 9.1e-12 75.9 435 30.6
Potri.018G005500 Populus trichocarpa HOM05D014278 ORTHO05D009846 1.2e-11 75.5 498 29.1
RcHm_v2.0_Chr6g0304991 Rosa chinensis HOM05D013263 ORTHO05D009846 1.2e-11 75.5 482 31.5
FAN15G3280 Fragaria x ananassa HOM05D013263 ORTHO05D009846 5.9e-11 73.2 410 29.8
PGR031G3799 Punica granatum HOM05D009522 ORTHO05D009846 7.7e-11 72.8 412 31.1
EL10Ac2g03757 Beta vulgaris HOM05D016385 ORTHO05D018262 1.0e-10 72.4 451 28.6
FAN20G1345 Fragaria x ananassa HOM05D013263 ORTHO05D009846 1.0e-10 72.4 411 29.4
Duzib187G1602 Durio zibethinus HOM05D019025 ORTHO05D009846 1.3e-10 72.0 433 31.9
Migut.A00437 Erythranthe guttata HOM05D009522 ORTHO05D009846 2.9e-10 70.9 180 38.9
THA.LOC104803324 Tarenaya hassleriana HOM05D008799 ORTHO05D010975 1.1e-09 68.9 415 29.9
Lj1g0027444 Lotus japonicus HOM05D013197 ORTHO05D009846 5.5e-09 66.6 510 31.2
Medtr3g108830 Medicago truncatula HOM05D013197 ORTHO05D009846 1.2e-08 65.5 43 76.7
Cc00_g05330 Coffea canephora HOM05D009522 ORTHO05D009846 7.9e-08 62.8 408 28.2
QL12p025151 Quercus lobata HOM05D013263 ORTHO05D009846 1.0e-07 62.4 496 26.8
MBI14_g19445_MAGBIO Magnolia biondii HOM05D021794 ORTHO05D009846 1.4e-07 62.0 470 26.6
Nitab4.5_0010092g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 1.8e-07 61.6 497 28.8
Medtr4g109220 Medicago truncatula HOM05D014856 ORTHO05D002235 2.3e-07 61.2 47 59.6
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 3.9e-07 60.5 46 60.9
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 5.1e-07 60.1 48 58.3
Glyma.17G076200 Glycine max HOM05D014856 ORTHO05D002235 6.7e-07 59.7 47 59.6
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 8.8e-07 59.3 48 58.3
Aqoxy7G02994 Aquilegia oxysepala HOM05D021794 ORTHO05D009846 1.1e-06 58.9 483 30.0
Ca_21794_v3 Cicer arietinum L. HOM05D014856 ORTHO05D002235 1.1e-06 58.9 47 59.6
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 1.1e-06 58.9 48 56.2
Glyma.05G023500 Glycine max HOM05D014856 ORTHO05D002235 1.1e-06 58.9 47 59.6
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 1.1e-06 58.9 46 58.7
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 1.1e-06 58.9 46 58.7
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 1.1e-06 58.9 52 53.8
VMungo0464G1515 Vigna mungo HOM05D016469 ORTHO05D012811 1.1e-06 58.9 40 72.5
Atru.chr8.382 Acer truncatum HOM05D003021 ORTHO05D002235 2.0e-06 58.2 48 56.2
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 2.0e-06 58.2 46 58.7
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 2.6e-06 57.8 48 56.2
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 2.6e-06 57.8 46 58.7
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 3.3e-06 57.4 48 54.2
MD14G1207900 Malus domestica HOM05D003021 ORTHO05D002235 3.3e-06 57.4 48 56.2
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 3.3e-06 57.4 46 56.5
Psat4g048880 Pisum sativum HOM05D014856 ORTHO05D002235 3.3e-06 57.4 47 59.6
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 4.4e-06 57.0 46 56.5
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 4.4e-06 57.0 46 56.5
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 4.4e-06 57.0 46 56.5
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 4.4e-06 57.0 48 54.2
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 4.4e-06 57.0 46 56.5
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 5.7e-06 56.6 48 54.2
ECA240G3142 Erigeron canadensis HOM05D009522 ORTHO05D009846 5.7e-06 56.6 75 46.7
MD08G1128300 Malus domestica HOM05D013263 ORTHO05D009846 5.7e-06 56.6 481 28.5
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 5.7e-06 56.6 46 56.5
Prupe.3G258800 Prunus persica HOM05D003021 ORTHO05D002235 5.7e-06 56.6 46 56.5
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 5.7e-06 56.6 46 56.5
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 5.7e-06 56.6 48 54.2
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 7.4e-06 56.2 46 56.5
FAN13G0757 Fragaria x ananassa HOM05D003021 ORTHO05D002235 7.4e-06 56.2 48 56.2
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 7.4e-06 56.2 46 56.5
Peaxi162Scf00274g00005 Petunia axillaris HOM05D003021 ORTHO05D022173 7.4e-06 56.2 46 54.3
Sopen03g034540 Solanum pennellii HOM05D003021 ORTHO05D022173 7.4e-06 56.2 46 56.5
Aa31LG11G4080 Aethionema arabicum HOM05D008799 ORTHO05D010975 9.7e-06 55.8 43 67.4
MSTRG.23902 Avicennia marina HOM05D003021 ORTHO05D002235 9.7e-06 55.8 48 54.2
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 9.7e-06 55.8 41 63.4
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 9.7e-06 55.8 41 63.4
Lsat_1_v5_gn_3_25381 Lactuca sativa HOM05D033113 ORTHO05D009846 9.7e-06 55.8 43 69.8
MBI16_g15533_MAGBIO Magnolia biondii HOM05D003021 ORTHO05D002235 9.7e-06 55.8 48 58.3
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 9.7e-06 55.8 46 54.3
Zm00001eb400410 Zea mays HOM05D003021 ORTHO05D002235 9.7e-06 55.8 46 56.5


User provided reference genes

Program Settings