Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 6.5e-96 354.0 170 100.0
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 7.9e-94 347.1 170 98.2
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 2.6e-89 332.0 170 93.5
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 3.8e-80 301.6 162 87.0
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 6.5e-80 300.8 168 83.9
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 1.5e-79 299.7 168 82.1
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 2.5e-79 298.9 168 82.7
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 1.0e-77 293.5 162 84.6
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 1.0e-77 293.5 168 79.8
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 1.0e-77 293.5 168 79.8
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.0e-77 293.5 168 81.0
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 1.4e-77 293.1 162 84.0
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 2.3e-77 292.4 169 82.2
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 2.3e-77 292.4 162 82.7
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 3.0e-77 292.0 171 80.1
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 4.0e-77 291.6 168 81.0
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 5.2e-77 291.2 168 80.4
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 6.7e-77 290.8 168 80.4
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 6.7e-77 290.8 168 80.4
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 1.1e-76 290.0 167 79.6
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.5e-76 289.7 168 81.5
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.5e-76 289.7 168 81.5
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 1.5e-76 289.7 168 78.6
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 1.5e-76 289.7 168 78.0
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 2.0e-76 289.3 166 82.5
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 2.6e-76 288.9 168 79.8
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 4.4e-76 288.1 166 82.5
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 7.5e-76 287.3 162 82.1
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 9.7e-76 287.0 162 80.9
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 1.7e-75 286.2 168 79.2
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 2.2e-75 285.8 168 79.8
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 3.7e-75 285.0 168 79.2
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 4.8e-75 284.6 168 78.6
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 4.8e-75 284.6 171 77.8
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 1.1e-74 283.5 169 79.3
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 1.1e-74 283.5 154 84.4
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 1.1e-74 283.5 162 82.1
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 1.4e-74 283.1 168 80.4
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 1.4e-74 283.1 168 77.4
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 3.1e-74 282.0 163 82.2
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 3.1e-74 282.0 168 78.6
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 7.0e-74 280.8 169 78.1
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 7.0e-74 280.8 165 80.0
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 1.2e-73 280.0 162 81.5
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 1.2e-73 280.0 161 81.4
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 1.2e-73 280.0 168 78.0
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 2.0e-73 279.3 162 80.9
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 2.0e-73 279.3 168 77.4
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 3.5e-73 278.5 161 79.5
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 4.5e-73 278.1 161 78.9
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 7.7e-73 277.3 171 77.2
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 1.0e-72 276.9 170 77.1
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 1.7e-72 276.2 162 80.2
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 5.0e-72 274.6 153 83.0
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 5.0e-72 274.6 158 81.0
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 6.5e-72 274.2 170 77.6
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 1.1e-71 273.5 161 78.9
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 1.5e-71 273.1 172 76.7
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 1.5e-71 273.1 165 77.0
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 4.2e-71 271.6 171 74.9
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 4.2e-71 271.6 171 74.9
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 7.2e-71 270.8 170 77.1
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 7.2e-71 270.8 153 82.4
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 9.4e-71 270.4 168 76.8
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 1.6e-70 269.6 161 78.9
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 2.1e-70 269.2 168 75.0
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 2.1e-70 269.2 167 74.9
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 2.1e-70 269.2 166 77.7
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 3.6e-70 268.5 173 75.1
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 3.6e-70 268.5 161 78.3
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 6.1e-70 267.7 161 78.9
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 8.0e-70 267.3 161 77.0
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 1.0e-69 266.9 161 77.6
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 1.0e-69 266.9 160 78.8
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 1.4e-69 266.5 161 77.0
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.8e-69 266.2 161 76.4
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 1.8e-69 266.2 161 76.4
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 1.8e-69 266.2 164 75.6
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 2.3e-69 265.8 173 74.0
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 5.2e-69 264.6 153 82.4
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 6.8e-69 264.2 156 80.1
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 8.8e-69 263.8 161 76.4
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 8.8e-69 263.8 161 76.4
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 2.6e-68 262.3 168 74.4
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 5.7e-68 261.2 165 73.9
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 5.7e-68 261.2 161 74.5
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 7.5e-68 260.8 160 76.9
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 9.8e-68 260.4 166 74.1
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 2.8e-67 258.8 161 75.2
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 1.4e-66 256.5 191 66.5
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 1.4e-66 256.5 162 75.9
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 2.4e-66 255.8 160 75.6
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 5.4e-66 254.6 160 76.2
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 7.0e-66 254.2 164 75.0
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 4.5e-65 251.5 168 72.0
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 5.9e-65 251.1 168 71.4
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 1.0e-64 250.4 139 82.0
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 1.0e-64 250.4 139 82.0
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 1.7e-64 249.6 158 75.3
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 1.7e-64 249.6 162 75.9
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 2.9e-64 248.8 158 74.7
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 2.9e-64 248.8 165 72.1
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 6.5e-64 247.7 165 71.5
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 2.5e-63 245.7 165 71.5
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 7.2e-63 244.2 150 76.7
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 2.7e-62 242.3 171 69.6
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 1.5e-60 236.5 184 64.1
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 9.8e-60 233.8 151 72.2
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 5.4e-58 228.0 158 71.5
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 9.2e-58 227.3 163 71.2
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 3.5e-57 225.3 154 68.2
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 1.7e-56 223.0 142 76.1
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 8.6e-56 220.7 176 62.5
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 9.5e-55 217.2 141 72.3
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 4.0e-53 211.8 314 41.4
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 6.8e-53 211.1 117 80.3
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 5.7e-52 208.0 134 75.4
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 1.2e-49 200.3 211 55.0
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 1.7e-48 196.4 109 81.7
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 1.0e-40 170.6 163 55.8
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 1.9e-39 166.4 306 36.6
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 3.7e-35 152.1 220 42.3
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.3e-27 127.1 84 75.0
Potri.018G036200 Populus trichocarpa HOM05D006214 ORTHO05D007723 3.8e-27 125.6 73 75.3
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 1.2e-25 120.6 66 84.8
CSS0007395 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 7.8e-25 117.9 80 65.0
C01p47490 Brassica napus HOM05D006214 ORTHO05D007723 1.1e-21 107.5 55 85.5
BolC1t04720H Brassica oleracea HOM05D006214 ORTHO05D007723 1.9e-15 86.7 44 84.1
Glyma.06G080700 Glycine max HOM05D006214 ORTHO05D007723 3.6e-14 82.4 70 51.4
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 5.8e-12 75.1 44 79.5
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 1.7e-11 73.6 88 45.5
arahy.Tifrunner.gnm1.ann1.YGZX15 Arachis hypogaea HOM05D000254 ORTHO05D000165 2.3e-08 63.2 39 69.2
SMO164G0257 Selaginella moellendorffii HOM05D014720 ORTHO05D377594 7.4e-07 58.2 47 63.8
Nitab4.5_0000250g0200 Nicotiana tabacum HOM05D006214 ORTHO05D007723 3.7e-06 55.8 39 61.5


User provided reference genes

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