Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 0.0e+00 2394.0 1196 100.0
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 0.0e+00 2166.0 1198 91.4
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 0.0e+00 1747.3 1207 76.5
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 0.0e+00 1297.7 1220 60.7
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.7e-105 388.7 1289 30.3
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 1.8e-104 385.2 1300 30.1
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 3.9e-102 377.5 1313 29.9
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.9e-96 358.6 1345 29.1
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.2e-95 355.9 1304 28.7
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 2.2e-89 335.1 1317 27.8
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 7.1e-88 330.1 1289 28.2
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 1.6e-87 328.9 1303 29.2
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 4.3e-85 320.9 1328 27.7
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 5.4e-80 303.9 1288 28.1
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.3e-78 298.5 1230 28.1
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 1.2e-76 292.7 1296 27.5
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.4e-75 289.3 1220 28.0
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.8e-75 288.9 1292 27.1
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.8e-75 288.9 1243 27.7
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 5.8e-74 283.9 1266 27.2
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 7.6e-74 283.5 1269 26.6
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 1.3e-73 282.7 1370 26.2
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.2e-73 282.0 1218 27.9
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.9e-73 281.6 1312 27.1
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.4e-72 279.3 1291 27.3
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 1.9e-72 278.9 1311 26.7
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 4.2e-72 277.7 1271 27.7
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.4e-72 277.3 1286 27.2
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.2e-71 276.2 1295 27.2
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 7.8e-71 273.5 1313 27.9
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 3.9e-70 271.2 1315 29.0
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.5e-69 269.2 1287 26.7
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 3.6e-68 264.6 1236 27.5
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.4e-67 261.9 1282 27.0
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.0e-66 258.8 1283 26.6
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 2.6e-66 258.5 1292 26.9
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 2.9e-65 255.0 1103 26.8
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 7.9e-63 246.9 1251 26.0
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.0e-62 246.5 1261 27.8
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 1.3e-62 246.1 1253 27.5
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 5.1e-62 244.2 1255 26.1
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 3.3e-61 241.5 1304 25.5
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.3e-60 239.6 993 28.6
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 2.8e-60 238.4 1240 27.1
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 4.8e-60 237.7 1256 27.6
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 4.5e-58 231.1 1237 26.6
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 4.9e-57 227.6 1258 27.3
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 6.4e-57 227.3 1269 25.7
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 2.3e-54 218.8 1255 26.1
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 2.5e-53 215.3 1225 26.6
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 2.5e-53 215.3 1252 27.0
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.5e-50 204.5 1421 23.6
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 6.5e-49 200.7 1256 25.5
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 2.3e-46 192.2 1262 25.0
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 3.0e-46 191.8 1269 24.6
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 5.1e-46 191.0 1039 25.7
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 5.7e-45 187.6 1197 24.9
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 8.2e-44 183.7 1254 24.6
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 5.0e-41 174.5 1076 26.2
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 5.1e-38 164.5 1260 24.0
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 2.5e-37 162.2 1293 24.7
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.7e-36 158.3 1321 23.1
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.4e-35 155.6 1317 23.2
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 3.4e-34 151.8 1289 24.1
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 9.4e-32 143.7 829 26.5
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.7e-31 142.1 548 28.1
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.6e-29 135.6 1246 24.2
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 7.4e-29 134.0 622 27.7
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 2.8e-28 132.1 1199 25.3
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 4.8e-28 131.3 1315 23.7
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 5.0e-25 121.3 1240 22.3
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 4.2e-24 118.2 1299 21.9
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.4e-24 117.1 1291 23.4
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.2e-23 116.7 1239 23.6
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.1e-23 115.9 1280 23.0
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.6e-23 115.2 1292 22.4
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 7.9e-23 114.0 1225 22.0
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 1.0e-22 113.6 1236 23.1
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 6.7e-22 110.9 1235 23.2
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.6e-21 109.0 1244 22.3
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 4.4e-21 108.2 1222 22.9
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.4e-21 108.2 1250 21.4
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 1.3e-20 106.7 1019 23.8
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 2.8e-20 105.5 1300 23.0
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.3e-20 104.4 1301 21.4
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.4e-19 103.2 1224 23.0
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 2.4e-19 102.4 350 28.6
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 4.1e-19 101.7 1304 22.6
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 7.0e-19 100.9 1265 23.1
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 7.0e-19 100.9 1294 23.0
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 1.6e-18 99.8 1208 23.1
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.5e-16 93.2 452 25.7
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 4.2e-16 91.7 1205 23.6
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 5.5e-16 91.3 1234 22.2
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.2e-15 90.1 553 26.0
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.6e-15 89.7 327 29.1
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.7e-15 89.0 452 26.1
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.6e-15 88.6 330 28.8
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 3.0e-14 85.5 1158 22.9
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 8.8e-14 84.0 438 26.3
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.5e-13 83.2 581 23.6
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 5.7e-13 81.3 118 40.7
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.7e-12 79.7 1287 21.5
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.4e-11 76.6 505 26.9
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 1.4e-11 76.6 505 26.9
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.4e-11 76.6 505 26.9
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 4.1e-11 75.1 1216 21.7
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 7.0e-11 74.3 503 25.6
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.6e-10 73.2 507 23.9
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 2.7e-10 72.4 1216 21.6
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 2.7e-10 72.4 1204 22.8
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 3.5e-10 72.0 642 22.3
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 5.9e-10 71.2 1213 22.4
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 1.0e-09 70.5 503 25.2
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.2e-09 69.3 203 28.6
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 6.5e-09 67.8 1328 22.7
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 1.9e-08 66.2 481 23.9
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 3.2e-08 65.5 1181 22.1
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 3.2e-08 65.5 1181 22.1
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 4.2e-08 65.1 104 40.4
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 9.4e-08 63.9 552 24.5
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 9.4e-08 63.9 1213 21.4
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 2.1e-07 62.8 116 32.8
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 2.7e-07 62.4 1192 21.7
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 3.6e-07 62.0 549 23.3
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 4.7e-07 61.6 190 27.9
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 6.1e-07 61.2 729 22.4
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 8.0e-07 60.8 989 20.4
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 1.4e-06 60.1 245 31.0
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 2.3e-06 59.3 1235 21.0
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 3.0e-06 58.9 237 30.0
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 5.2e-06 58.2 414 22.0


User provided reference genes

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