Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011125.2 Cucumis melo HOM05D002019 ORTHO05D028946 3.4e-70 268.5 163 100.0
CsaV3_2G030660 Cucumis sativus L. HOM05D002019 ORTHO05D028946 1.1e-60 236.9 161 88.8
ClCG08G012070 Citrullus lanatus HOM05D002019 ORTHO05D028946 1.0e-53 213.8 161 82.0
Sed0028136 Sechium edule HOM05D002019 ORTHO05D028946 1.5e-28 130.2 164 62.2
Actinidia39775 Actinidia chinensis HOM05D000606 ORTHO05D002249 5.2e-10 68.6 68 57.4
Dinv42258 Davidia involucrata HOM05D002019 ORTHO05D002150 6.8e-10 68.2 82 48.8
Duzib235G0090 Durio zibethinus HOM05D002019 ORTHO05D002150 6.8e-10 68.2 128 44.5
Dinv37969 Davidia involucrata HOM05D002019 ORTHO05D002150 1.5e-09 67.0 76 53.9
Duzib192G0761 Durio zibethinus HOM05D002019 ORTHO05D002150 7.5e-09 64.7 129 38.8
Dinv36721 Davidia involucrata HOM05D002019 ORTHO05D002150 9.8e-09 64.3 82 48.8
Lj4g0009291 Lotus japonicus HOM05D002019 ORTHO05D002150 9.8e-09 64.3 65 61.5
TAR383G0675 Trochodendron aralioides HOM05D002019 ORTHO05D002150 9.8e-09 64.3 79 49.4
Haze_15857 Corylus avellana HOM05D002019 ORTHO05D002150 1.7e-08 63.5 76 48.7
vmacro10845 Vaccinium macrocarpon HOM05D002019 ORTHO05D002150 1.7e-08 63.5 83 48.2
Phvul.002G307900 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 2.2e-08 63.2 79 54.4
Ciclev10026542m.g Citrus clementina HOM05D002019 ORTHO05D002150 3.7e-08 62.4 65 55.4
Lalb_Chr05g0223301 Lupinus albus HOM05D002019 ORTHO05D002150 3.7e-08 62.4 80 50.0
Duzib160G0479 Durio zibethinus HOM05D002019 ORTHO05D002150 4.9e-08 62.0 82 43.9
Nn8g39043 Nelumbo nucifera HOM05D002019 ORTHO05D002150 4.9e-08 62.0 75 50.7
PGSC0003DMG400002524 Solanum tuberosum HOM05D002019 ORTHO05D002150 4.9e-08 62.0 72 51.4
Thecc.06G101300 Theobroma cacao HOM05D002019 ORTHO05D002150 4.9e-08 62.0 123 43.1
CiPaw.02G145100 Carya illinoinensis HOM05D002019 ORTHO05D002150 6.4e-08 61.6 73 50.7
Solyc03g121090.4 Solanum lycopersicum HOM05D002019 ORTHO05D002150 8.3e-08 61.2 85 44.7
Sopen03g039920 Solanum pennellii HOM05D002019 ORTHO05D002150 8.3e-08 61.2 85 44.7
VMungo0251G1925 Vigna mungo HOM05D002019 ORTHO05D002150 8.3e-08 61.2 134 45.5
Actinidia39130 Actinidia chinensis HOM05D002019 ORTHO05D002150 1.1e-07 60.8 72 51.4
CSS0006437 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 1.1e-07 60.8 77 49.4
CSS0034986 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 1.1e-07 60.8 77 49.4
MSTRG.19546 Avicennia marina HOM05D002019 ORTHO05D002150 1.4e-07 60.5 88 44.3
EL10Ac9g21200 Beta vulgaris HOM05D002019 ORTHO05D002150 1.4e-07 60.5 77 45.5
CiPaw.01G230600 Carya illinoinensis HOM05D002019 ORTHO05D002150 1.4e-07 60.5 122 41.0
Dinv30427 Davidia involucrata HOM05D002019 ORTHO05D002150 1.4e-07 60.5 80 50.0
Nn6g35346 Nelumbo nucifera HOM05D002019 ORTHO05D002150 1.4e-07 60.5 75 50.7
GSVIVG01015284001 Vitis vinifera HOM05D002019 ORTHO05D002150 1.4e-07 60.5 70 50.0
ECA236G1898 Erigeron canadensis HOM05D002019 ORTHO05D002150 1.9e-07 60.1 62 53.2
CiPaw.03G222800 Carya illinoinensis HOM05D002019 ORTHO05D002150 2.4e-07 59.7 66 50.0
Psat7g017520 Pisum sativum HOM05D002019 ORTHO05D002150 2.4e-07 59.7 71 46.5
DCAR_028650 Daucus carota HOM05D002019 ORTHO05D002150 3.2e-07 59.3 142 43.7
Hma1.2p1_0430F.1_g151290 Hydrangea macrophylla HOM05D002019 ORTHO05D002150 3.2e-07 59.3 85 43.5
Rhsim05G0041800 Rhododendron simsii HOM05D002019 ORTHO05D002150 3.2e-07 59.3 135 40.0
arahy.Tifrunner.gnm1.ann1.SQC659 Arachis hypogaea HOM05D002019 ORTHO05D002150 4.1e-07 58.9 42 66.7
arahy.Tifrunner.gnm1.ann1.ZUC4D4 Arachis hypogaea HOM05D002019 ORTHO05D002150 4.1e-07 58.9 42 66.7
Glyma.11G208700 Glycine max HOM05D002019 ORTHO05D002150 4.1e-07 58.9 98 38.8
HanXRQChr04g0107731 Helianthus annuus HOM05D002019 ORTHO05D002150 4.1e-07 58.9 82 47.6
Medtr3g064350 Medicago truncatula HOM05D002019 ORTHO05D002150 4.1e-07 58.9 42 64.3
Phvul.004G174600 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 4.1e-07 58.9 79 44.3
VMungo0464G1221 Vigna mungo HOM05D002019 ORTHO05D002150 4.1e-07 58.9 79 45.6
EL10Ac8g18366 Beta vulgaris HOM05D002019 ORTHO05D002150 5.4e-07 58.5 83 43.4
Cpa.g.sc78.30 Carica papaya HOM05D002019 ORTHO05D002150 5.4e-07 58.5 83 44.6
Thhalv10014792m.g Eutrema salsugineum HOM05D002019 ORTHO05D002150 5.4e-07 58.5 81 45.7
Gohir.D09G080900 Gossypium hirsutum HOM05D002019 ORTHO05D002150 5.4e-07 58.5 67 47.8
Gorai.006G096500 Gossypium raimondii HOM05D002019 ORTHO05D002150 5.4e-07 58.5 67 47.8
TPR.G33508 Trifolium pratense HOM05D002019 ORTHO05D002150 5.4e-07 58.5 79 44.3
BcaB01g04407 Brassica carinata HOM05D002019 ORTHO05D002150 7.1e-07 58.2 74 47.3
CSS0017772 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 7.1e-07 58.2 65 46.2
Glyma.01G006000 Glycine max HOM05D002019 ORTHO05D002150 7.1e-07 58.2 128 35.2
Glyma.05G225900 Glycine max HOM05D002019 ORTHO05D002150 7.1e-07 58.2 82 47.6
Manes.11G032500 Manihot esculenta HOM05D002019 ORTHO05D002150 7.1e-07 58.2 77 46.8
TAR622G0329 Trochodendron aralioides HOM05D002019 ORTHO05D002150 7.1e-07 58.2 68 47.1
arahy.Tifrunner.gnm1.ann1.EZ0DFJ Arachis hypogaea HOM05D002019 ORTHO05D002150 9.2e-07 57.8 42 61.9
CSS0002322 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 9.2e-07 57.8 86 46.5
CAN.G1143.19 Capsicum annuum HOM05D002019 ORTHO05D002150 9.2e-07 57.8 142 36.6
CiPaw.03G078600 Carya illinoinensis HOM05D002019 ORTHO05D002150 9.2e-07 57.8 42 69.0
Glyma.07G125600 Glycine max HOM05D002019 ORTHO05D002150 9.2e-07 57.8 79 45.6
Gohir.A09G080900 Gossypium hirsutum HOM05D002019 ORTHO05D002150 9.2e-07 57.8 67 46.3
AT5G56550 Arabidopsis thaliana HOM05D002019 ORTHO05D002150 1.2e-06 57.4 75 49.3
A02p09010 Brassica napus HOM05D002019 ORTHO05D002150 1.2e-06 57.4 80 45.0
BraA02t05970Z Brassica rapa HOM05D002019 ORTHO05D002150 1.2e-06 57.4 80 45.0
Glyma.18G045200 Glycine max HOM05D002019 ORTHO05D002150 1.2e-06 57.4 42 61.9
QL05p019670 Quercus lobata HOM05D002019 ORTHO05D002150 1.2e-06 57.4 68 50.0
Hund00702 Selenicereus undatus HOM05D002019 ORTHO05D002150 1.2e-06 57.4 74 47.3
TPR.G37435 Trifolium pratense HOM05D002019 ORTHO05D002150 1.2e-06 57.4 42 61.9
TAR629G3490 Trochodendron aralioides HOM05D002019 ORTHO05D002150 1.2e-06 57.4 70 44.3
CARHR270230 Cardamine hirsuta HOM05D002019 ORTHO05D002150 1.6e-06 57.0 82 46.3
Gohir.A02G117000 Gossypium hirsutum HOM05D002019 ORTHO05D002150 1.6e-06 57.0 79 44.3
Lsat_1_v5_gn_4_98220 Lactuca sativa HOM05D002019 ORTHO05D002150 1.6e-06 57.0 64 51.6
Sed0002966 Sechium edule HOM05D002019 ORTHO05D002150 1.6e-06 57.0 59 52.5
CiPaw.04G155300 Carya illinoinensis HOM05D002019 ORTHO05D002150 2.1e-06 56.6 70 48.6
Migut.J01088 Erythranthe guttata HOM05D002019 ORTHO05D002150 2.1e-06 56.6 73 45.2
FvH4_6g32530 Fragaria vesca HOM05D002019 ORTHO05D002150 2.1e-06 56.6 70 45.7
FAN05G3360 Fragaria x ananassa HOM05D002019 ORTHO05D002150 2.1e-06 56.6 70 45.7
FAN14G0437 Fragaria x ananassa HOM05D002019 ORTHO05D002150 2.1e-06 56.6 70 45.7
Psat1g050760 Pisum sativum HOM05D002019 ORTHO05D002150 2.1e-06 56.6 75 45.3
Psat5g145360 Pisum sativum HOM05D002019 ORTHO05D002150 2.1e-06 56.6 42 61.9
SalBow5G0949 Salvia bowleyana HOM05D002019 ORTHO05D002150 2.1e-06 56.6 41 65.9
Atru.chr1.3547 Acer truncatum HOM05D002019 ORTHO05D002150 2.7e-06 56.2 71 47.9
CSS0029504 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 2.7e-06 56.2 78 44.9
ClCG03G016040 Citrullus lanatus HOM05D002019 ORTHO05D002150 2.7e-06 56.2 143 35.7
Manes.04G135000 Manihot esculenta HOM05D002019 ORTHO05D002150 2.7e-06 56.2 76 47.4
Manes.16G107900 Manihot esculenta HOM05D002019 ORTHO05D002150 2.7e-06 56.2 73 46.6
Psat1g050120 Pisum sativum HOM05D002019 ORTHO05D002150 2.7e-06 56.2 141 36.2
Sed0026115 Sechium edule HOM05D002019 ORTHO05D002150 2.7e-06 56.2 69 47.8
Migut.J01125 Erythranthe guttata HOM05D002019 ORTHO05D002150 3.5e-06 55.8 73 45.2
Glyma.02G239800 Glycine max HOM05D002019 ORTHO05D002150 3.5e-06 55.8 90 48.9
MD15G1198100 Malus domestica HOM05D002019 ORTHO05D002150 3.5e-06 55.8 79 44.3
Potri.001G190700 Populus trichocarpa HOM05D002019 ORTHO05D002150 3.5e-06 55.8 40 67.5
PGR142G1562 Punica granatum HOM05D002019 ORTHO05D002150 3.5e-06 55.8 71 43.7
Rhsim10G0186200 Rhododendron simsii HOM05D002019 ORTHO05D002150 3.5e-06 55.8 42 59.5
SGA_v2.0_scaffold45G17000 Striga asiatica HOM05D002019 ORTHO05D002150 3.5e-06 55.8 46 63.0
BcaC03g14214 Brassica carinata HOM05D002019 ORTHO05D002150 4.6e-06 55.5 75 46.7
C02p15140 Brassica napus HOM05D002019 ORTHO05D002150 4.6e-06 55.5 75 46.7
C03p15590 Brassica napus HOM05D002019 ORTHO05D002150 4.6e-06 55.5 73 47.9
BolC2t07631H Brassica oleracea HOM05D002019 ORTHO05D002150 4.6e-06 55.5 75 46.7
BolC3t13996H Brassica oleracea HOM05D002019 ORTHO05D002150 4.6e-06 55.5 73 47.9
CSS0008756 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 4.6e-06 55.5 129 45.7
Lj4P371T13 Lonicera japonica HOM05D002019 ORTHO05D002150 4.6e-06 55.5 61 49.2
MD17G1181600 Malus domestica HOM05D002019 ORTHO05D002150 4.6e-06 55.5 83 41.0
Nitab4.5_0004969g0050 Nicotiana tabacum HOM05D002019 ORTHO05D002150 4.6e-06 55.5 41 61.0
Phvul.006G085800 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 4.6e-06 55.5 41 61.0
Sabra01G0150800 Salix brachista HOM05D002019 ORTHO05D002150 4.6e-06 55.5 40 67.5
SalBow1G2100 Salvia bowleyana HOM05D002019 ORTHO05D002150 4.6e-06 55.5 62 48.4
GSVIVG01035317001 Vitis vinifera HOM05D002019 ORTHO05D002150 4.6e-06 55.5 167 31.1
arahy.Tifrunner.gnm1.ann1.TVU1YR Arachis hypogaea HOM05D002019 ORTHO05D002150 6.0e-06 55.1 42 57.1
BcaB05g22285 Brassica carinata HOM05D002019 ORTHO05D002150 6.0e-06 55.1 82 45.1
A03p13330 Brassica napus HOM05D002019 ORTHO05D002150 6.0e-06 55.1 73 47.9
Gorai.003G061300 Gossypium raimondii HOM05D002019 ORTHO05D002150 6.0e-06 55.1 74 44.6
Lsat_1_v5_gn_8_86961 Lactuca sativa HOM05D002019 ORTHO05D002150 6.0e-06 55.1 79 46.8
PSO832G3635 Papaver somniferum HOM05D002019 ORTHO05D002150 6.0e-06 55.1 98 38.8
Psat7g017680 Pisum sativum HOM05D002019 ORTHO05D002150 6.0e-06 55.1 73 39.7
Psat7g018040 Pisum sativum HOM05D002019 ORTHO05D002150 6.0e-06 55.1 71 43.7
RcHm_v2.0_Chr2g0092151 Rosa chinensis HOM05D002019 ORTHO05D002150 6.0e-06 55.1 70 47.1
TWI12G1440 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 6.0e-06 55.1 73 46.6
AL8G32370 Arabidopsis lyrata HOM05D002019 ORTHO05D002150 7.8e-06 54.7 75 45.3
COL.COLO4_30527 Corchorus olitorius HOM05D002019 ORTHO05D002150 7.8e-06 54.7 81 42.0
FAN02G1665 Fragaria x ananassa HOM05D002019 ORTHO05D002150 7.8e-06 54.7 69 44.9
FAN28G2283 Fragaria x ananassa HOM05D000606 ORTHO05D002249 7.8e-06 54.7 70 45.7
Lj6g0022787 Lotus japonicus HOM05D002019 ORTHO05D002150 7.8e-06 54.7 42 59.5
Manes.03G027900 Manihot esculenta HOM05D002019 ORTHO05D002150 7.8e-06 54.7 83 44.6
Oeu058689.1 Olea europaea HOM05D002019 ORTHO05D002150 7.8e-06 54.7 42 59.5
Prupe.3G057300 Prunus persica HOM05D002019 ORTHO05D002150 7.8e-06 54.7 69 46.4
Hund26288 Selenicereus undatus HOM05D002019 ORTHO05D002150 7.8e-06 54.7 41 58.5


User provided reference genes

Program Settings