Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 2.6e-102 375.6 212 100.0
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 4.9e-101 371.3 211 99.1
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 3.0e-98 362.1 212 96.7
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 3.4e-86 322.0 212 87.7
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 6.2e-64 248.1 211 67.3
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 8.2e-64 247.7 212 66.5
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 6.5e-61 238.0 212 66.0
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 6.5e-61 238.0 204 65.2
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 6.5e-61 238.0 215 65.1
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 1.1e-60 237.3 210 64.8
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 4.2e-60 235.3 212 64.6
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 5.5e-60 235.0 210 63.8
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 5.5e-60 235.0 212 64.2
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 9.3e-60 234.2 211 62.6
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 1.6e-59 233.4 215 63.3
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 2.1e-59 233.0 212 64.2
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 2.7e-59 232.6 214 64.0
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 4.6e-59 231.9 212 63.2
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 4.6e-59 231.9 210 62.4
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.3e-58 230.3 212 64.2
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.3e-58 230.3 212 63.7
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.8e-58 229.9 213 63.4
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 5.1e-58 228.4 212 62.3
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 6.7e-58 228.0 208 64.9
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 1.1e-57 227.3 214 61.7
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 1.5e-57 226.9 208 63.5
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 2.5e-57 226.1 211 62.6
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 4.3e-57 225.3 209 61.7
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 5.7e-57 224.9 213 60.6
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 1.3e-56 223.8 213 61.5
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 2.2e-56 223.0 212 61.8
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 2.8e-56 222.6 213 61.0
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 8.2e-56 221.1 212 59.9
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.8e-55 219.9 213 60.6
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 3.1e-55 219.2 215 61.4
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 6.9e-55 218.0 213 61.5
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 6.9e-55 218.0 213 59.6
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 1.2e-54 217.2 208 61.5
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 1.5e-54 216.9 215 60.5
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 3.4e-54 215.7 219 60.7
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 7.7e-54 214.5 215 59.5
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 1.3e-53 213.8 210 57.1
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 1.7e-53 213.4 208 61.5
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 2.9e-53 212.6 209 61.2
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 5.0e-53 211.8 213 61.0
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 1.9e-52 209.9 213 58.2
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 1.9e-52 209.9 209 58.4
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 3.2e-52 209.1 211 57.8
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 4.2e-52 208.8 200 64.0
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 4.6e-51 205.3 214 59.3
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 1.0e-50 204.1 213 58.2
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 1.8e-50 203.4 197 58.4
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 8.8e-50 201.1 211 56.9
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.5e-49 200.3 214 60.7
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 2.0e-49 199.9 219 56.2
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 5.7e-49 198.4 176 64.2
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 5.7e-49 198.4 214 56.5
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 9.7e-49 197.6 213 56.3
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 6.3e-48 194.9 210 53.8
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.1e-47 194.1 210 53.3
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.1e-47 194.1 215 52.1
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 1.8e-47 193.4 212 53.3
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 3.1e-47 192.6 212 53.8
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.2e-46 190.7 209 55.0
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.2e-46 190.7 211 50.7
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 1.5e-46 190.3 208 59.1
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 7.7e-46 188.0 210 52.4
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 7.7e-46 188.0 209 54.1
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 1.0e-45 187.6 209 52.2
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 1.3e-45 187.2 205 52.2
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 2.2e-45 186.4 209 52.2
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 3.8e-45 185.7 202 56.9
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 3.8e-45 185.7 211 49.3
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 6.5e-45 184.9 222 51.4
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 1.4e-44 183.7 211 52.6
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 7.2e-44 181.4 211 51.2
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 1.2e-43 180.6 222 51.8
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.6e-43 180.3 209 49.8
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 2.1e-43 179.9 210 49.0
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 2.1e-43 179.9 211 52.6
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 2.7e-43 179.5 212 49.5
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 3.6e-43 179.1 211 50.7
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 4.7e-43 178.7 211 50.2
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 1.8e-42 176.8 209 50.2
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 1.8e-42 176.8 213 47.9
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.8e-42 176.8 209 48.8
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 5.1e-42 175.3 204 51.5
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 5.1e-42 175.3 211 47.9
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 1.5e-41 173.7 211 51.2
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 7.4e-41 171.4 210 47.6
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 7.4e-41 171.4 211 50.7
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 1.3e-40 170.6 210 48.1
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 2.8e-40 169.5 212 49.1
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 3.7e-40 169.1 212 52.4
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 3.7e-40 169.1 209 50.2
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 4.8e-40 168.7 211 49.8
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 1.8e-39 166.8 211 46.0
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 4.1e-39 165.6 211 50.2
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 5.3e-39 165.2 217 44.2
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 7.0e-39 164.9 211 50.2
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.0e-38 163.3 208 50.5
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 2.6e-38 162.9 163 58.3
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 2.2e-37 159.8 209 47.8
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 3.8e-37 159.1 212 49.5
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.1e-36 157.5 220 42.7
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 1.1e-36 157.5 205 44.4
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 1.1e-36 157.5 208 48.6
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 2.5e-36 156.4 213 44.6
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 4.2e-36 155.6 200 48.0
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 9.4e-36 154.5 211 46.0
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 1.2e-35 154.1 216 45.8
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.1e-35 153.3 214 43.9
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 2.1e-35 153.3 217 43.8
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 2.1e-35 153.3 213 48.8
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 6.1e-35 151.8 217 43.3
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 3.0e-34 149.4 206 45.1
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 3.3e-33 146.0 201 44.3
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 2.2e-32 143.3 215 46.0
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 2.8e-32 142.9 201 43.3
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 6.3e-32 141.7 214 42.1
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 8.2e-32 141.4 207 45.4
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 9.1e-31 137.9 138 56.5
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 2.7e-30 136.3 195 45.6
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 2.7e-30 136.3 215 41.9
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 4.5e-30 135.6 195 44.6
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 4.5e-30 135.6 195 44.6
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 7.7e-30 134.8 195 45.1
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 7.7e-30 134.8 205 42.0
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 7.7e-30 134.8 200 44.0
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 1.3e-29 134.0 206 42.7
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 2.9e-29 132.9 194 43.8
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 5.5e-28 128.6 190 44.2
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 1.2e-27 127.5 198 41.4
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.6e-27 127.1 139 56.1
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 4.7e-27 125.6 221 43.0
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 6.1e-27 125.2 217 40.1
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 8.0e-27 124.8 214 39.7
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 1.4e-26 124.0 214 38.8
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.8e-26 123.6 207 40.1
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 3.0e-26 122.9 146 52.1
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 8.8e-26 121.3 213 39.9
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 9.8e-25 117.9 138 54.3
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 1.1e-23 114.4 213 40.4
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 7.0e-23 111.7 205 40.5
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 1.7e-21 107.1 216 38.9
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 8.5e-21 104.8 115 50.4
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 1.1e-20 104.4 213 36.6
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 1.5e-20 104.0 212 36.3
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.9e-20 103.6 138 44.2
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 9.4e-20 101.3 118 50.0
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 4.7e-19 99.0 209 38.3
Phvul.008G182701 Phaseolus vulgaris HOM05D004648 ORTHO05D307582 7.5e-09 65.1 86 44.2
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 1.1e-07 61.2 84 48.8


User provided reference genes

Program Settings