Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011066.2 Cucumis melo HOM05D007577 ORTHO05D002366 1.1e-73 280.0 158 100.0
CsaV3_2G030080 Cucumis sativus L. HOM05D007577 ORTHO05D002366 1.0e-66 256.9 158 95.6
Sed0009750 Sechium edule HOM05D007577 ORTHO05D002366 3.8e-42 175.3 155 59.4
Sed0013944 Sechium edule HOM05D007577 ORTHO05D002366 8.5e-42 174.1 163 63.8
ClCG08G011490 Citrullus lanatus HOM05D007577 ORTHO05D002366 4.0e-39 165.2 158 65.2
QL09p017111 Quercus lobata HOM05D007577 ORTHO05D002366 6.6e-34 147.9 168 48.8
Haze_22347 Corylus avellana HOM05D007577 ORTHO05D002366 1.2e-32 143.7 179 53.6
Nitab4.5_0001507g0070 Nicotiana tabacum HOM05D007577 ORTHO05D002366 6.1e-32 141.4 181 47.0
Peaxi162Scf00281g00079 Petunia axillaris HOM05D007577 ORTHO05D002366 1.2e-30 137.1 185 45.9
Manes.02G147100 Manihot esculenta HOM05D007577 ORTHO05D002366 2.6e-30 136.0 168 49.4
CiPaw.08G053900 Carya illinoinensis HOM05D007577 ORTHO05D002366 3.4e-30 135.6 184 44.6
Duzib041G0196 Durio zibethinus HOM05D007577 ORTHO05D002366 2.9e-29 132.5 170 45.9
Manes.18G061400 Manihot esculenta HOM05D007577 ORTHO05D002366 4.9e-29 131.7 176 44.9
Thecc.08G067500 Theobroma cacao HOM05D007577 ORTHO05D002366 6.4e-29 131.3 175 45.1
FvH4_5g35850 Fragaria vesca HOM05D007577 ORTHO05D002366 8.3e-29 131.0 207 44.0
Potri.005G158400 Populus trichocarpa HOM05D007577 ORTHO05D002366 1.4e-28 130.2 179 44.1
FAN18G2443 Fragaria x ananassa HOM05D007577 ORTHO05D002366 1.8e-28 129.8 207 43.5
Actinidia10365 Actinidia chinensis HOM05D007577 ORTHO05D002366 2.4e-28 129.4 175 44.6
VMungo0647G2546 Vigna mungo HOM05D007577 ORTHO05D002366 3.2e-28 129.0 193 44.0
TAR376G0287 Trochodendron aralioides HOM05D007577 ORTHO05D002366 4.1e-28 128.6 176 43.2
FAN08G0887 Fragaria x ananassa HOM05D007577 ORTHO05D002366 7.0e-28 127.9 207 43.0
Phvul.008G179400 Phaseolus vulgaris HOM05D007577 ORTHO05D002366 7.0e-28 127.9 192 41.1
Solyc04g076010.3 Solanum lycopersicum HOM05D007577 ORTHO05D002366 7.0e-28 127.9 183 44.3
vmacro21310 Vaccinium macrocarpon HOM05D007577 ORTHO05D002366 1.2e-27 127.1 182 44.0
Sabra05G0120900 Salix brachista HOM05D007577 ORTHO05D002366 3.5e-27 125.6 174 44.3
FAN04G3208 Fragaria x ananassa HOM05D007577 ORTHO05D002366 5.9e-27 124.8 208 41.3
Glyma.02G212100 Glycine max HOM05D007577 ORTHO05D002366 7.8e-27 124.4 191 44.0
MD15G1381100 Malus domestica HOM05D007577 ORTHO05D002366 1.7e-26 123.2 195 44.1
Medtr5g065350 Medicago truncatula HOM05D007577 ORTHO05D002366 2.3e-26 122.9 178 44.9
LjContig00408g0001347 Lotus japonicus HOM05D007577 ORTHO05D002366 3.9e-26 122.1 196 40.8
MBI06_g18795_MAGBIO Magnolia biondii HOM05D007577 ORTHO05D002366 3.9e-26 122.1 165 46.1
PGR031G3996 Punica granatum HOM05D007577 ORTHO05D002366 3.9e-26 122.1 171 42.1
arahy.Tifrunner.gnm1.ann1.15IZES Arachis hypogaea HOM05D007577 ORTHO05D002366 5.0e-26 121.7 173 46.2
COL.COLO4_35193 Corchorus olitorius HOM05D007577 ORTHO05D002366 5.0e-26 121.7 197 40.1
PGR042G1402 Punica granatum HOM05D007577 ORTHO05D002366 5.0e-26 121.7 198 39.4
CANSAT25G2895 Cannabis sativa HOM05D007577 ORTHO05D002366 8.6e-26 120.9 195 45.6
Duzib093G2023 Durio zibethinus HOM05D007577 ORTHO05D002366 8.6e-26 120.9 171 41.5
MD08G1192700 Malus domestica HOM05D007577 ORTHO05D002366 8.6e-26 120.9 199 46.2
Lalb_Chr04g0253001 Lupinus albus HOM05D007577 ORTHO05D002366 1.1e-25 120.6 176 40.9
Gohir.A02G077300 Gossypium hirsutum HOM05D007577 ORTHO05D002366 1.5e-25 120.2 168 44.0
RcHm_v2.0_Chr7g0237581 Rosa chinensis HOM05D007577 ORTHO05D002366 1.5e-25 120.2 196 39.8
Rhsim06G0074200 Rhododendron simsii HOM05D004661 ORTHO05D005827 2.5e-25 119.4 185 42.2
Glyma.14G179800 Glycine max HOM05D007577 ORTHO05D002366 3.3e-25 119.0 190 39.5
Gohir.A05G221500 Gossypium hirsutum HOM05D007577 ORTHO05D002366 4.3e-25 118.6 165 47.3
Nitab4.5_0006922g0010 Nicotiana tabacum HOM05D007577 ORTHO05D002366 4.3e-25 118.6 170 45.9
Sc23g0000570 Simmondsia chinensis HOM05D007577 ORTHO05D002366 4.3e-25 118.6 174 43.1
TWI12G1315 Tripterygium wilfordii HOM05D007577 ORTHO05D002366 9.5e-25 117.5 169 41.4
Cc10_g15550 Coffea canephora HOM05D007577 ORTHO05D002366 1.6e-24 116.7 182 42.3
Gohir.D05G224200 Gossypium hirsutum HOM05D007577 ORTHO05D002366 2.1e-24 116.3 171 43.3
Eucgr.F00405 Eucalyptus grandis HOM05D007577 ORTHO05D002366 4.7e-24 115.2 187 41.7
Gorai.009G231700 Gossypium raimondii HOM05D007577 ORTHO05D002366 4.7e-24 115.2 171 43.3
Lalb_Chr17g0344401 Lupinus albus HOM05D007577 ORTHO05D002366 1.0e-23 114.0 185 40.5
Atru.chr13.1051 Acer truncatum HOM05D007577 ORTHO05D002366 4.0e-23 112.1 185 38.4
Gorai.005G095300 Gossypium raimondii HOM05D007577 ORTHO05D002366 4.0e-23 112.1 169 42.6
Lalb_Chr10g0102661 Lupinus albus HOM05D007577 ORTHO05D002366 4.0e-23 112.1 185 37.8
MSTRG.24626 Avicennia marina HOM05D007577 ORTHO05D002366 8.9e-23 110.9 168 41.7
arahy.Tifrunner.gnm1.ann1.MEQI9D Arachis hypogaea HOM05D007577 ORTHO05D002366 1.2e-22 110.5 176 42.6
Hund27003 Selenicereus undatus HOM05D007577 ORTHO05D002366 1.2e-22 110.5 200 37.5
Psat0s2495g0040 Pisum sativum HOM05D007577 ORTHO05D002366 2.6e-22 109.4 191 38.2
TPR.G20891 Trifolium pratense HOM05D007577 ORTHO05D002366 4.4e-22 108.6 190 38.9
Gohir.D02G084600 Gossypium hirsutum HOM05D007577 ORTHO05D002366 7.5e-22 107.8 169 42.0
Dinv44835 Davidia involucrata HOM05D007577 ORTHO05D002366 1.3e-21 107.1 59 72.9
Duzib116G0880 Durio zibethinus HOM05D007577 ORTHO05D002366 1.3e-21 107.1 159 40.9
TAR625G1503 Trochodendron aralioides HOM05D007577 ORTHO05D002366 1.7e-21 106.7 169 41.4
Cpa.g.sc608.1 Carica papaya HOM05D007577 ORTHO05D002366 2.9e-21 105.9 209 35.9
SalBow3G1297 Salvia bowleyana HOM05D007577 ORTHO05D002366 3.7e-21 105.5 167 42.5
Lsat_1_v5_gn_1_2280 Lactuca sativa HOM05D007577 ORTHO05D002366 4.9e-21 105.1 192 38.0
TAR628G0666 Trochodendron aralioides HOM05D007577 ORTHO05D002366 4.9e-21 105.1 160 39.4
Migut.N00361 Erythranthe guttata HOM05D007577 ORTHO05D002366 1.4e-20 103.6 161 44.1
Eucgr.F02125 Eucalyptus grandis HOM05D007577 ORTHO05D002366 9.2e-20 100.9 69 60.9
CiPaw.07G168400 Carya illinoinensis HOM05D007577 ORTHO05D002366 1.2e-19 100.5 152 46.1
Hma1.2p1_0620F.1_g190555 Hydrangea macrophylla HOM05D007577 ORTHO05D002366 1.6e-19 100.1 53 77.4
Ciclev10002010m.g Citrus clementina HOM05D007577 ORTHO05D002366 3.5e-19 99.0 209 38.3
ATR0022G018 Amborella trichopoda HOM05D007577 ORTHO05D002366 2.3e-18 96.3 171 35.1
Sc26g0000220 Simmondsia chinensis HOM05D007577 ORTHO05D002366 2.3e-18 96.3 164 39.6
Nn5g29944 Nelumbo nucifera HOM05D007577 ORTHO05D002366 6.6e-18 94.7 71 57.7
TWI56G0426 Tripterygium wilfordii HOM05D007577 ORTHO05D002366 6.6e-18 94.7 165 38.2
HPP92_002220 Vanilla planifolia HOM05D007577 ORTHO05D002366 1.9e-17 93.2 177 37.9
HanXRQChr04g0108601 Helianthus annuus HOM05D007577 ORTHO05D002366 2.5e-17 92.8 83 54.2
Nn1g05500 Nelumbo nucifera HOM05D007577 ORTHO05D002366 3.3e-17 92.4 71 59.2
ECA247G1746 Erigeron canadensis HOM05D007577 ORTHO05D002366 5.6e-17 91.7 185 31.4
Aqoxy5G01332 Aquilegia oxysepala HOM05D007945 ORTHO05D010049 1.6e-16 90.1 63 58.7
PSO541G0756 Papaver somniferum HOM05D007577 ORTHO05D002366 3.6e-16 89.0 82 47.6
Aqoxy6G01467 Aquilegia oxysepala HOM05D007577 ORTHO05D002366 2.3e-15 86.3 205 31.7
HPP92_016372 Vanilla planifolia HOM05D007577 ORTHO05D002366 2.2e-13 79.7 149 33.6
Os04g0450000 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 3.7e-13 79.0 54 57.4
Prupe.1G527300 Prunus persica HOM05D007577 ORTHO05D002366 3.7e-13 79.0 177 39.0
Zm00001eb081390 Zea mays HOM05D007577 ORTHO05D002366 6.4e-13 78.2 54 57.4
PSO675G7602 Papaver somniferum HOM05D007577 ORTHO05D002366 1.9e-12 76.6 82 43.9
Zm00001eb244610 Zea mays HOM05D007577 ORTHO05D002366 2.1e-11 73.2 50 60.0
Os03g0187400 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 3.5e-11 72.4 52 59.6
Os02g0568600 Oryza sativa ssp. japonica HOM05D007577 ORTHO05D002366 4.6e-11 72.0 49 59.2
Zm00001eb401520 Zea mays HOM05D007577 ORTHO05D002366 4.6e-11 72.0 173 33.5
Zm00001eb006590 Zea mays HOM05D007577 ORTHO05D002366 3.0e-10 69.3 164 34.1
Zm00001eb423710 Zea mays HOM05D003505 ORTHO05D002366 3.9e-10 68.9 47 59.6
CSS0010517 Camellia sinensis var. sinensis HOM05D007577 ORTHO05D002366 6.6e-10 68.2 141 40.4
SMO274G0065 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 6.6e-10 68.2 81 42.0
Oeu043942.1 Olea europaea HOM05D007577 ORTHO05D002366 8.6e-10 67.8 136 38.2
SEGI_40577 Sequoiadendron giganteum HOM05D007577 ORTHO05D002366 1.1e-09 67.4 42 61.9
DCAR_025091 Daucus carota HOM05D003505 ORTHO05D002366 4.3e-09 65.5 62 51.6
MELO3C000279.2 Cucumis melo HOM05D003505 ORTHO05D002366 7.3e-09 64.7 65 44.6
Zm00001eb244620 Zea mays HOM05D007577 ORTHO05D002366 9.5e-09 64.3 43 60.5
Ca_07813_v3 Cicer arietinum L. HOM05D003505 ORTHO05D002366 1.2e-08 63.9 87 37.9
DCAR_025090 Daucus carota HOM05D003505 ORTHO05D002366 1.2e-08 63.9 64 50.0
SMO364G0458 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 2.8e-08 62.8 54 50.0
Nn1g00971 Nelumbo nucifera HOM05D003505 ORTHO05D002366 3.6e-08 62.4 88 38.6
CsaV3_6G009110 Cucumis sativus L. HOM05D003505 ORTHO05D002366 1.1e-07 60.8 66 40.9
TWI59G1259 Tripterygium wilfordii HOM05D003505 ORTHO05D002366 1.1e-07 60.8 55 45.5
SMO367G0729 Selaginella moellendorffii HOM05D003505 ORTHO05D002366 1.4e-07 60.5 54 48.1
Aa31LG10G14800 Aethionema arabicum HOM05D003505 ORTHO05D002366 1.8e-07 60.1 50 52.0
SEGI_16387 Sequoiadendron giganteum HOM05D020288 ORTHO05D019556 3.1e-07 59.3 58 50.0
Sc02g0002860 Simmondsia chinensis HOM05D003505 ORTHO05D002366 4.0e-07 58.9 62 45.2
CDE04G0168 Ceratophyllum demersum HOM05D020288 ORTHO05D002366 1.2e-06 57.4 72 38.9
CDE05G1434 Ceratophyllum demersum HOM05D020288 ORTHO05D019556 1.2e-06 57.4 65 40.0
MBI04_g09513_MAGBIO Magnolia biondii HOM05D003505 ORTHO05D002366 1.2e-06 57.4 52 46.2
AL5G42820 Arabidopsis lyrata HOM05D003505 ORTHO05D002366 1.5e-06 57.0 45 53.3
BcaC08g45070 Brassica carinata HOM05D003505 ORTHO05D002366 1.5e-06 57.0 45 53.3
C06p26790 Brassica napus HOM05D003505 ORTHO05D002366 1.5e-06 57.0 45 53.3
BraA07t30155Z Brassica rapa HOM05D003505 ORTHO05D002366 1.5e-06 57.0 45 53.3
CARHR170920 Cardamine hirsuta HOM05D003505 ORTHO05D002366 1.5e-06 57.0 45 53.3
Thhalv10006310m.g Eutrema salsugineum HOM05D003505 ORTHO05D002366 1.5e-06 57.0 45 53.3
Actinidia30808 Actinidia chinensis HOM05D007577 ORTHO05D002366 2.0e-06 56.6 41 68.3
ATR0006G064 Amborella trichopoda HOM05D003505 ORTHO05D019556 2.0e-06 56.6 89 34.8
EL10Ac1g01102 Beta vulgaris HOM05D007577 ORTHO05D002366 4.4e-06 55.5 193 29.0
C08p35500 Brassica napus HOM05D003505 ORTHO05D002366 4.4e-06 55.5 45 51.1
BolC8t51142H Brassica oleracea HOM05D003505 ORTHO05D002366 4.4e-06 55.5 45 51.1
BraA09t40706Z Brassica rapa HOM05D003505 ORTHO05D002366 4.4e-06 55.5 45 51.1
Carub.0005s2726 Capsella rubella HOM05D003505 ORTHO05D002366 4.4e-06 55.5 45 51.1
Sp5g02700 Schrenkiella parvula HOM05D003505 ORTHO05D002366 4.4e-06 55.5 45 51.1
SEGI_29775 Sequoiadendron giganteum HOM05D003505 ORTHO05D002366 4.4e-06 55.5 46 50.0
TAR374G1750 Trochodendron aralioides HOM05D003505 ORTHO05D002366 5.8e-06 55.1 71 35.2
AT3G60520 Arabidopsis thaliana HOM05D003505 ORTHO05D002366 7.6e-06 54.7 155 30.3


User provided reference genes

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