Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.7e-51 205.7 102 100.0
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 2.6e-44 181.8 101 88.1
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 2.6e-44 181.8 101 90.1
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 3.8e-43 177.9 101 84.2
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 3.0e-32 141.7 75 92.0
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 4.0e-24 114.8 102 57.8
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 4.4e-23 111.3 102 52.9
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 7.5e-23 110.5 102 56.9
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 1.3e-22 109.8 102 54.9
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 6.3e-22 107.5 102 52.9
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.3e-22 107.5 102 50.0
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 8.3e-22 107.1 102 53.9
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 1.1e-21 106.7 102 50.0
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.1e-21 106.7 102 50.0
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.1e-21 106.7 102 50.0
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.1e-21 106.7 102 50.0
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 1.8e-21 105.9 102 53.9
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 2.4e-21 105.5 102 51.0
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 5.4e-21 104.4 102 51.0
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 7.0e-21 104.0 103 53.4
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 1.6e-20 102.8 102 51.0
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 2.0e-20 102.4 101 51.5
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 2.0e-20 102.4 102 49.0
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 2.7e-20 102.1 101 50.5
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 7.8e-20 100.5 102 47.1
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 7.8e-20 100.5 102 47.1
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 1.0e-19 100.1 102 48.0
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 1.7e-19 99.4 102 47.1
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 2.3e-19 99.0 101 51.5
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.3e-19 99.0 99 50.5
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.3e-19 99.0 100 52.0
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 2.9e-19 98.6 102 49.0
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 2.9e-19 98.6 101 47.5
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 2.9e-19 98.6 103 47.6
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 3.8e-19 98.2 101 51.5
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 6.6e-19 97.4 102 49.0
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 8.6e-19 97.1 101 50.5
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 8.6e-19 97.1 101 49.5
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 1.5e-18 96.3 103 47.6
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 1.9e-18 95.9 103 47.6
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.5e-18 95.5 99 46.5
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.5e-18 95.5 103 47.6
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 2.5e-18 95.5 103 47.6
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 2.5e-18 95.5 100 49.0
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 2.5e-18 95.5 103 47.6
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 4.3e-18 94.7 101 45.5
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 4.3e-18 94.7 101 46.5
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 4.3e-18 94.7 101 47.5
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.6e-18 94.4 96 53.1
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.5e-18 93.6 99 46.5
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.5e-18 93.6 99 46.5
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-17 92.8 96 47.9
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-17 92.8 96 47.9
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-17 92.8 96 47.9
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-17 92.8 96 47.9
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-17 92.8 96 47.9
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-17 92.8 96 47.9
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-17 92.4 96 47.9
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 2.8e-17 92.0 102 46.1
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-17 92.0 95 48.4
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-17 92.0 96 46.9
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-17 92.0 96 46.9
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 3.6e-17 91.7 101 47.5
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 4.7e-17 91.3 101 43.6
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.1e-17 90.9 96 47.9
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.1e-17 90.9 96 47.9
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 6.1e-17 90.9 94 51.1
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.0e-16 90.1 101 45.5
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-16 89.7 96 46.9
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 2.3e-16 89.0 100 44.0
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 2.3e-16 89.0 100 44.0
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 3.0e-16 88.6 100 44.0
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 5.2e-16 87.8 103 44.7
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 8.9e-16 87.0 101 45.5
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 8.9e-16 87.0 102 44.1
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.9e-16 87.0 96 45.8
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 1.2e-15 86.7 102 43.1
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.2e-15 86.7 100 41.0
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 1.2e-15 86.7 100 42.0
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.5e-15 86.3 101 44.6
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.5e-15 86.3 101 46.5
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 2.6e-15 85.5 103 43.7
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 3.4e-15 85.1 103 44.7
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 3.4e-15 85.1 100 41.0
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.4e-15 84.7 100 40.0
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 1.3e-14 83.2 102 43.1
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 1.7e-14 82.8 101 42.6
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.9e-14 82.0 100 39.0
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 4.9e-14 81.3 100 45.0
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 6.4e-14 80.9 99 44.4
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 8.3e-14 80.5 100 40.0
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 1.1e-13 80.1 99 39.4
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.4e-13 79.7 100 39.0
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 1.4e-13 79.7 76 51.3
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 1.8e-13 79.3 99 42.4
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 1.8e-13 79.3 101 39.6
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 2.4e-13 79.0 102 40.2
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 3.2e-13 78.6 96 45.8
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 5.4e-13 77.8 100 38.0
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.0e-13 77.4 82 47.6
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 2.0e-12 75.9 100 41.0
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 3.5e-12 75.1 100 38.0
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 3.5e-12 75.1 100 38.0
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 3.5e-12 75.1 100 38.0
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 6.0e-12 74.3 102 36.3
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 6.0e-12 74.3 99 43.4
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.0e-11 73.6 100 38.0
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.7e-11 72.8 101 40.6
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 1.7e-11 72.8 100 42.0
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 5.0e-11 71.2 100 39.0
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 8.6e-11 70.5 103 38.8
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 5.6e-10 67.8 74 44.6
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 8.0e-09 63.9 99 39.4
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 8.0e-09 63.9 100 35.0
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.3e-08 62.4 102 35.3
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 5.2e-08 61.2 102 37.3
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.2e-07 60.1 100 41.0
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 1.5e-07 59.7 100 39.0
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.5e-07 59.7 104 37.5
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 1.5e-07 59.7 100 39.0
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 2.6e-07 58.9 99 39.4
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 7.5e-07 57.4 100 39.0
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 2.9e-06 55.5 100 41.0
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 2.9e-06 55.5 100 41.0
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 3.7e-06 55.1 99 36.4
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 8.3e-06 53.9 57 50.9


User provided reference genes

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