Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.1e-238 828.6 400 100.0
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 3.5e-225 784.6 400 94.2
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 8.7e-208 726.9 398 88.7
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 7.1e-202 707.2 400 85.0
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 1.9e-178 629.4 399 77.4
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 7.9e-177 624.0 363 79.9
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.5e-175 619.8 377 78.5
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 1.2e-172 610.1 400 74.8
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 2.0e-172 609.4 378 77.0
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 4.5e-172 608.2 364 79.1
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 7.7e-172 607.4 396 75.3
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.4e-170 603.2 368 78.0
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 5.5e-170 601.3 401 72.8
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.5e-170 601.3 368 77.7
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 9.4e-170 600.5 397 72.3
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.4e-170 600.5 377 75.9
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.1e-169 599.4 368 77.7
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 2.7e-169 599.0 361 77.6
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 1.8e-168 596.3 366 77.6
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.0e-168 595.5 345 80.3
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 5.1e-168 594.7 378 74.6
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.1e-167 593.6 359 76.9
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 2.0e-167 592.8 380 73.7
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 3.3e-167 592.0 400 71.5
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 4.3e-167 591.7 380 73.7
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 4.3e-167 591.7 396 73.0
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 4.3e-167 591.7 381 75.1
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 7.4e-167 590.9 373 74.5
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 7.4e-167 590.9 363 77.4
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 2.2e-166 589.3 361 78.1
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.1e-165 587.0 397 72.5
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.4e-165 586.6 401 71.6
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.8e-165 586.3 363 76.6
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 3.1e-165 585.5 348 79.6
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 4.1e-165 585.1 388 72.7
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 4.1e-165 585.1 388 72.2
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 4.1e-165 585.1 398 72.1
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 5.3e-165 584.7 403 71.2
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 6.9e-165 584.3 370 74.9
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 9.1e-165 583.9 351 78.3
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 9.1e-165 583.9 396 72.0
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 2.0e-164 582.8 388 72.4
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 4.5e-164 581.6 399 71.7
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 5.9e-164 581.3 389 73.0
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 7.7e-164 580.9 392 72.4
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.3e-163 580.1 363 74.7
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.3e-163 580.1 363 74.7
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 2.9e-163 578.9 386 72.0
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 2.9e-163 578.9 386 72.0
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 5.0e-163 578.2 400 71.0
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.0e-163 578.2 400 71.0
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 8.5e-163 577.4 364 78.3
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 3.2e-162 575.5 386 71.8
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 3.2e-162 575.5 386 72.0
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 3.2e-162 575.5 365 75.9
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 4.2e-162 575.1 362 75.4
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 2.7e-161 572.4 345 76.5
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.3e-160 569.3 350 76.9
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.9e-160 568.5 340 77.9
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 8.8e-160 567.4 342 76.6
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 8.8e-160 567.4 401 70.3
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.1e-159 567.0 399 69.7
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 7.4e-159 564.3 362 74.6
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 4.1e-157 558.5 379 69.9
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 4.1e-157 558.5 364 74.2
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 5.3e-157 558.1 348 77.9
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 9.1e-157 557.4 388 69.6
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.6e-156 555.8 398 69.3
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 4.5e-156 555.1 360 73.9
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 7.7e-156 554.3 363 73.0
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.3e-155 553.5 354 73.7
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.3e-155 553.5 371 70.4
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.2e-155 552.7 359 73.8
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 6.5e-155 551.2 339 75.5
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 8.5e-155 550.8 339 75.8
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 7.2e-154 547.7 327 76.1
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.6e-153 546.6 387 68.5
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 3.6e-153 545.4 363 71.9
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 6.1e-153 544.7 400 66.0
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.0e-152 543.9 387 68.5
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 1.4e-152 543.5 378 70.6
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 2.3e-152 542.7 380 70.5
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 2.3e-152 542.7 346 75.7
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 4.0e-152 542.0 358 69.8
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 4.0e-152 542.0 345 74.5
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 1.5e-151 540.0 362 70.2
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.0e-151 539.7 327 77.1
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 3.7e-150 535.4 360 69.4
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.8e-150 535.0 364 69.8
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 8.2e-150 534.3 365 69.6
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 1.4e-149 533.5 374 69.0
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.4e-149 532.7 362 70.4
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 3.1e-149 532.3 363 69.1
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 4.1e-149 531.9 342 75.1
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 7.0e-149 531.2 373 70.5
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 9.1e-149 530.8 401 65.3
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 9.1e-149 530.8 365 69.0
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.5e-148 528.9 364 69.0
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 5.0e-147 525.0 364 69.2
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.1e-146 523.9 376 68.1
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.9e-146 523.1 336 73.5
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 3.2e-146 522.3 389 67.4
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 3.6e-145 518.8 385 65.7
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 8.0e-145 517.7 360 69.4
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.0e-144 517.3 345 71.6
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 6.8e-144 514.6 309 78.0
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 7.5e-143 511.1 367 67.0
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 2.8e-142 509.2 306 77.8
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.4e-141 506.1 366 66.7
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.7e-140 502.7 345 69.9
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 1.0e-139 500.7 343 70.6
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.8e-139 498.8 340 68.5
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 3.0e-136 489.2 407 62.7
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 7.0e-133 478.0 353 66.0
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 6.6e-131 471.5 339 65.2
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 3.6e-129 465.7 388 60.3
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 4.7e-129 465.3 370 63.0
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 1.8e-128 463.4 374 61.2
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 9.8e-127 457.6 364 61.8
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.2e-125 452.6 317 68.8
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.6e-124 448.7 286 74.5
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 4.3e-122 442.2 301 66.8
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.8e-120 436.8 341 61.0
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.0e-119 433.3 343 60.3
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.9e-117 426.8 231 83.1
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.3e-115 420.6 383 57.2
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 9.5e-114 414.5 387 56.6
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.2e-111 407.5 301 66.8
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 7.5e-111 404.8 328 57.0
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.9e-109 400.2 316 63.3
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 3.3e-106 389.4 402 52.0
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 6.0e-100 368.6 203 85.2
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.6e-99 364.8 198 84.8
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 7.1e-93 345.1 198 79.8
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 3.9e-91 339.3 219 74.4
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.5e-90 337.4 234 70.9
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 5.6e-90 335.5 177 88.7
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 6.0e-84 315.5 231 67.1
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.9e-82 310.5 294 54.8
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.1e-76 290.4 229 63.8
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.0e-75 288.1 399 39.3
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.4e-72 277.7 342 41.8
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.5e-71 274.2 255 54.5
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 3.4e-71 273.1 304 43.8
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 9.3e-69 265.0 221 60.6
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 3.0e-59 233.4 352 38.4
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 2.5e-58 230.3 198 57.6
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 7.9e-52 208.8 361 36.3
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 5.9e-47 192.6 125 75.2
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.0e-35 153.3 148 56.1
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.3e-34 150.2 117 62.4
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.3e-33 148.3 121 55.4
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.4e-24 117.5 66 81.8
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.4e-19 101.7 56 82.1


User provided reference genes

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