Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 5.1e-66 254.2 123 100.0
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 1.5e-65 252.7 123 99.2
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 1.8e-63 245.7 123 95.9
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 7.1e-60 233.8 123 88.6
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 8.7e-58 226.9 123 87.8
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.9e-57 225.7 123 87.0
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 2.5e-57 225.3 124 88.7
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 1.6e-56 222.6 123 86.2
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 8.1e-56 220.3 123 83.7
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 1.8e-55 219.2 123 82.9
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 1.8e-55 219.2 123 82.1
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 4.0e-55 218.0 123 82.9
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 4.0e-55 218.0 123 83.7
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 4.0e-55 218.0 123 83.7
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 6.9e-55 217.2 123 83.7
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 9.0e-55 216.9 123 83.7
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 1.2e-54 216.5 124 82.3
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 1.5e-54 216.1 124 83.1
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.5e-54 216.1 123 83.7
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 1.5e-54 216.1 123 82.9
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 2.0e-54 215.7 124 83.9
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 2.0e-54 215.7 121 86.8
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 2.0e-54 215.7 123 83.7
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 2.0e-54 215.7 123 83.7
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 2.0e-54 215.7 123 83.7
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 2.6e-54 215.3 123 82.9
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 3.4e-54 214.9 123 83.7
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 3.4e-54 214.9 123 83.7
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 3.4e-54 214.9 123 82.9
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 3.4e-54 214.9 123 82.9
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 3.4e-54 214.9 123 82.1
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 7.6e-54 213.8 124 83.1
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 7.6e-54 213.8 122 82.0
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 7.6e-54 213.8 123 83.7
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 9.9e-54 213.4 123 82.1
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 9.9e-54 213.4 122 82.0
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 9.9e-54 213.4 123 79.7
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 1.3e-53 213.0 123 82.9
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 1.3e-53 213.0 123 82.1
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 1.3e-53 213.0 123 83.7
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.3e-53 213.0 123 83.7
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 1.3e-53 213.0 121 81.8
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 1.7e-53 212.6 123 81.3
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.7e-53 212.6 123 80.5
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 2.2e-53 212.2 123 81.3
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 2.2e-53 212.2 123 82.1
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.2e-53 212.2 123 80.5
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 3.8e-53 211.5 123 82.1
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 3.8e-53 211.5 123 80.5
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 4.9e-53 211.1 123 81.3
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 4.9e-53 211.1 123 82.9
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 4.9e-53 211.1 124 79.0
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 4.9e-53 211.1 123 81.3
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 6.4e-53 210.7 123 81.3
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 6.4e-53 210.7 123 79.7
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 6.4e-53 210.7 123 81.3
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 8.4e-53 210.3 123 78.9
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 8.4e-53 210.3 123 82.1
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.1e-52 209.9 121 81.8
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.1e-52 209.9 123 78.0
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 1.4e-52 209.5 123 78.0
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.9e-52 209.1 123 79.7
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 1.9e-52 209.1 123 80.5
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 1.9e-52 209.1 123 81.3
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.4e-52 208.8 123 82.1
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 2.4e-52 208.8 124 78.2
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 3.2e-52 208.4 123 77.2
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 3.2e-52 208.4 124 76.6
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 4.2e-52 208.0 123 79.7
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 5.4e-52 207.6 123 78.0
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 5.4e-52 207.6 123 82.9
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 7.1e-52 207.2 123 77.2
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.2e-51 206.5 122 78.7
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 1.6e-51 206.1 123 79.7
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 2.7e-51 205.3 123 80.5
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 2.7e-51 205.3 125 79.2
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 3.5e-51 204.9 126 77.8
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 4.6e-51 204.5 123 77.2
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 4.6e-51 204.5 123 78.9
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 6.0e-51 204.1 126 77.8
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 6.0e-51 204.1 126 77.8
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 6.0e-51 204.1 123 76.4
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 7.8e-51 203.8 121 76.9
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.0e-50 203.4 123 76.4
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.0e-50 203.4 122 77.9
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 1.3e-50 203.0 116 82.8
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 1.7e-50 202.6 126 77.0
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 2.3e-50 202.2 124 77.4
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 5.1e-50 201.1 125 76.0
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 5.1e-50 201.1 116 81.9
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 6.6e-50 200.7 124 78.2
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 8.7e-50 200.3 125 77.6
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 1.5e-49 199.5 125 78.4
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.9e-49 199.1 125 78.4
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.9e-49 199.1 125 78.4
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 1.9e-49 199.1 123 75.6
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 2.5e-49 198.7 116 81.0
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 4.3e-49 198.0 123 76.4
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 4.3e-49 198.0 125 76.0
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 4.3e-49 198.0 125 78.4
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 4.3e-49 198.0 124 78.2
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 4.3e-49 198.0 124 73.4
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 7.3e-49 197.2 129 71.3
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 9.6e-49 196.8 125 77.6
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 2.8e-48 195.3 125 74.4
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 2.8e-48 195.3 124 77.4
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 3.6e-48 194.9 128 71.9
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 3.6e-48 194.9 128 71.9
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 3.6e-48 194.9 125 73.6
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 4.8e-48 194.5 125 74.4
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 4.8e-48 194.5 125 76.8
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 4.8e-48 194.5 123 74.8
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 1.1e-47 193.4 125 76.0
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 1.4e-47 193.0 127 70.9
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 1.4e-47 193.0 127 70.9
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 1.8e-47 192.6 123 74.0
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 3.1e-47 191.8 125 72.0
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 9.0e-47 190.3 127 70.1
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 9.0e-47 190.3 125 71.2
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 9.0e-47 190.3 121 72.7
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 2.0e-46 189.1 126 71.4
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 5.8e-46 187.6 123 69.1
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 7.6e-46 187.2 125 74.4
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 9.9e-46 186.8 125 73.6
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 9.9e-46 186.8 125 71.2
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 2.2e-45 185.7 116 74.1
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 3.8e-45 184.9 125 73.6
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 4.9e-45 184.5 121 73.6
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.1e-44 183.3 125 70.4
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.1e-44 183.3 125 72.8
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 1.4e-44 183.0 125 68.8
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 1.4e-44 183.0 118 75.4
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 1.9e-44 182.6 123 67.5
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 2.4e-44 182.2 125 70.4
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 3.2e-44 181.8 123 69.1
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 3.2e-44 181.8 115 74.8
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 4.2e-44 181.4 121 69.4
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 4.2e-44 181.4 121 69.4
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 4.2e-44 181.4 123 69.9
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 2.1e-43 179.1 118 72.0
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 2.7e-43 178.7 123 68.3
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 3.5e-43 178.3 114 75.4
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 7.9e-43 177.2 113 74.3
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 7.9e-43 177.2 121 68.6
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 1.8e-42 176.0 122 68.0
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 2.3e-42 175.6 123 71.5
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.1e-41 173.3 116 70.7
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 7.4e-41 170.6 109 71.6
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 3.7e-40 168.3 122 68.0
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 1.8e-39 166.0 123 60.2
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 5.8e-38 161.0 123 59.3
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 8.4e-37 157.1 122 61.5
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 9.3e-36 153.7 87 77.0
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 5.6e-33 144.4 123 56.1
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.3e-32 143.3 106 67.0
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 1.4e-31 139.8 132 50.8
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 1.8e-31 139.4 131 50.4
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 1.4e-28 129.8 123 55.3
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 2.7e-27 125.6 123 51.2
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.9e-26 121.7 106 58.5
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 4.3e-25 118.2 132 44.7
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 2.8e-24 115.5 115 53.0
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 8.2e-24 114.0 122 49.2
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 1.7e-21 106.3 68 70.6
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 1.4e-20 103.2 123 46.3
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 9.3e-20 100.5 63 69.8
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.1e-18 94.7 57 71.9
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 2.6e-09 65.9 39 66.7


User provided reference genes

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