Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.0e-187 659.1 352 100.0
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.3e-170 603.2 352 92.0
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 4.4e-155 551.6 367 82.3
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 7.1e-121 438.0 360 69.2
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 3.1e-76 289.7 364 48.9
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.5e-75 287.3 364 48.6
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 2.5e-73 280.0 365 46.8
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 3.2e-73 279.6 349 50.7
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.3e-71 273.5 348 48.0
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.5e-70 270.8 356 49.4
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 7.7e-67 258.5 362 44.8
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 6.5e-66 255.4 357 46.5
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 9.4e-65 251.5 356 43.0
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.6e-64 250.8 348 46.6
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 4.7e-64 249.2 345 44.9
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 3.9e-63 246.1 355 44.5
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 8.8e-63 245.0 352 44.0
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 3.3e-62 243.0 368 43.8
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 4.8e-61 239.2 379 41.2
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.8e-60 237.3 309 47.2
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 2.6e-59 233.4 361 41.3
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 5.9e-59 232.3 344 42.7
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 7.7e-59 231.9 365 40.3
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.0e-58 231.5 354 41.5
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 1.0e-58 231.5 352 41.8
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 3.8e-58 229.6 350 42.9
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 3.8e-58 229.6 366 41.3
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 5.0e-58 229.2 308 43.5
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.5e-57 227.6 364 40.7
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.9e-57 227.3 332 42.8
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 4.2e-57 226.1 364 40.4
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 1.2e-56 224.6 361 40.7
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.0e-55 221.5 365 40.0
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.3e-55 220.3 331 42.3
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 3.0e-55 219.9 367 40.3
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 1.5e-54 217.6 376 40.7
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 5.7e-54 215.7 367 40.3
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 9.7e-54 214.9 364 39.8
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 2.2e-53 213.8 356 40.4
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 2.2e-53 213.8 364 39.8
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.8e-53 213.4 367 39.0
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 3.7e-53 213.0 364 39.8
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.4e-52 211.1 367 38.7
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 2.4e-52 210.3 346 40.2
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.3e-52 209.1 328 41.2
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 5.3e-52 209.1 355 40.6
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 7.0e-52 208.8 351 39.9
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.2e-51 208.0 363 39.7
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.6e-51 207.6 366 39.6
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.6e-51 207.6 367 39.2
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 1.6e-51 207.6 357 40.1
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 2.0e-51 207.2 369 40.9
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.7e-50 204.1 347 36.6
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 2.2e-50 203.8 368 39.4
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 2.9e-50 203.4 358 36.3
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 8.5e-50 201.8 333 38.7
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.1e-49 201.4 350 38.6
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 7.2e-49 198.7 366 38.3
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 9.4e-49 198.4 364 38.2
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 1.2e-48 198.0 348 37.4
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 4.7e-48 196.1 393 36.4
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 8.0e-48 195.3 312 41.3
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 4.0e-47 193.0 364 37.6
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.5e-46 191.0 363 37.2
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 7.5e-46 188.7 351 37.0
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 7.5e-46 188.7 405 35.3
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 2.2e-45 187.2 368 36.4
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 2.8e-45 186.8 355 38.9
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 3.1e-44 183.3 307 37.5
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 5.4e-44 182.6 366 36.1
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 2.0e-43 180.6 344 36.3
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 3.8e-42 176.4 351 35.3
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 2.5e-41 173.7 343 35.3
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 7.2e-41 172.2 309 36.2
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 6.1e-40 169.1 349 33.8
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 6.1e-40 169.1 357 35.3
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 8.0e-40 168.7 367 35.4
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 1.8e-39 167.5 302 36.8
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 4.0e-39 166.4 351 35.9
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.2e-38 164.9 356 34.0
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 1.5e-38 164.5 360 35.3
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 2.0e-38 164.1 353 34.0
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 4.4e-38 162.9 350 35.4
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 4.4e-38 162.9 351 35.3
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 7.5e-38 162.2 340 35.0
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 9.8e-38 161.8 321 36.8
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 2.2e-37 160.6 351 34.5
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 2.8e-37 160.2 340 35.0
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 2.8e-37 160.2 359 33.7
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 4.9e-37 159.5 345 34.2
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 6.3e-37 159.1 373 33.2
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 6.3e-37 159.1 347 33.7
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 8.3e-37 158.7 346 33.5
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 1.1e-36 158.3 373 32.7
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 1.4e-36 157.9 318 35.8
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.6e-35 154.5 287 33.8
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.6e-35 154.5 304 34.9
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 5.9e-35 152.5 311 35.4
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 7.7e-35 152.1 320 33.8
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 1.0e-34 151.8 219 42.0
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 1.7e-34 151.0 312 36.2
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 2.5e-33 147.1 280 35.7
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 2.1e-32 144.1 354 32.2
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 1.4e-31 141.4 355 31.8
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 1.4e-31 141.4 309 34.6
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 1.8e-31 141.0 263 36.9
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 3.0e-31 140.2 354 31.6
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 8.9e-31 138.7 283 32.5
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 9.8e-30 135.2 356 30.9
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 5.9e-27 125.9 365 31.0
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.3e-26 124.8 230 33.5
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 2.3e-26 124.0 356 29.8
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 3.9e-26 123.2 367 30.0
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 6.6e-26 122.5 377 31.3
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 1.9e-25 120.9 209 39.2
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 1.6e-24 117.9 342 28.7
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 2.8e-24 117.1 309 30.7
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 6.8e-23 112.5 365 28.8
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 1.2e-22 111.7 158 46.2
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 5.8e-22 109.4 274 31.8
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.9e-21 107.1 185 40.0
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 6.4e-21 105.9 381 28.1
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 7.0e-20 102.4 108 47.2
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 7.0e-20 102.4 264 29.5
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 3.5e-19 100.1 313 27.5
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 9.5e-17 92.0 332 26.8
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.8e-15 87.8 379 28.0
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 4.0e-15 86.7 210 34.3
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 6.8e-15 85.9 103 43.7
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 6.8e-15 85.9 357 23.0
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 8.9e-15 85.5 354 27.1
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 5.8e-14 82.8 196 29.6
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 7.5e-14 82.4 388 24.5
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 2.2e-13 80.9 369 26.6
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 2.3e-10 70.9 146 37.7
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 1.5e-09 68.2 216 27.3
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 4.7e-08 63.2 367 24.8


User provided reference genes

Program Settings