Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 5.3e-254 880.6 449 100.0
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 1.6e-242 842.4 452 95.8
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 2.1e-234 815.5 451 92.2
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 6.7e-217 757.3 449 85.7
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 3.1e-169 599.0 444 70.7
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 1.5e-168 596.7 445 71.0
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 3.4e-168 595.5 453 70.2
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 5.8e-168 594.7 441 70.3
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 9.8e-168 594.0 475 67.4
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.3e-167 593.6 445 69.9
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.9e-166 589.7 443 69.5
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 7.0e-166 587.8 451 68.5
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 9.2e-166 587.4 454 68.1
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.2e-165 587.0 453 68.4
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 4.6e-165 585.1 455 67.7
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 7.8e-165 584.3 462 67.5
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.0e-164 583.9 452 66.8
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 1.3e-164 583.6 445 69.7
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 3.0e-164 582.4 453 67.5
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 3.0e-164 582.4 438 69.4
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 6.6e-164 581.3 484 64.7
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.1e-163 580.5 445 69.2
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 2.5e-163 579.3 447 68.0
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 2.5e-163 579.3 442 69.0
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 7.3e-163 577.8 438 68.9
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 9.5e-163 577.4 460 67.0
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 1.2e-162 577.0 445 67.9
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 2.8e-162 575.9 438 68.7
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 2.8e-162 575.9 443 67.7
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 1.4e-161 573.5 453 67.8
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 5.2e-161 571.6 450 67.3
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 5.2e-161 571.6 460 65.0
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 2.0e-160 569.7 432 67.6
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 5.8e-160 568.2 445 65.4
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 8.3e-159 564.3 491 61.9
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 1.9e-158 563.1 438 66.0
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.9e-158 563.1 442 68.3
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 2.4e-158 562.8 451 65.2
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 9.2e-158 560.8 436 66.5
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 1.2e-157 560.5 429 68.8
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 2.7e-157 559.3 445 67.0
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 8.6e-156 554.3 460 65.2
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 8.6e-156 554.3 442 64.9
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 3.3e-155 552.4 457 65.0
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 3.3e-155 552.4 488 61.3
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 3.3e-155 552.4 520 59.4
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 4.3e-155 552.0 459 63.2
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 4.3e-155 552.0 446 64.6
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 4.3e-155 552.0 436 65.4
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 1.1e-153 547.4 445 64.3
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 1.8e-153 546.6 432 65.5
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 2.4e-153 546.2 462 63.4
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 8.9e-153 544.3 442 63.6
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 2.6e-152 542.7 442 64.0
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 2.6e-152 542.7 459 62.3
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 5.8e-152 541.6 462 64.3
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 7.6e-152 541.2 438 64.6
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 1.3e-151 540.4 446 61.4
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 8.4e-151 537.7 436 64.7
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 1.1e-150 537.3 462 63.2
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 1.6e-149 533.5 466 62.0
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 7.8e-149 531.2 451 60.8
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 2.5e-147 526.2 436 63.5
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 3.3e-147 525.8 481 58.0
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 4.3e-147 525.4 454 61.0
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 1.2e-146 523.9 456 61.0
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 2.1e-146 523.1 476 58.4
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 2.1e-146 523.1 445 61.8
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 3.6e-146 522.3 434 62.9
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 3.6e-146 522.3 435 62.3
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 3.6e-146 522.3 439 61.0
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.4e-145 520.4 435 61.6
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 1.2e-144 517.3 432 61.6
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 2.6e-144 516.2 446 60.3
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 5.8e-144 515.0 432 61.3
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 5.8e-144 515.0 432 62.0
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 1.7e-143 513.5 435 63.7
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 6.4e-143 511.5 431 60.8
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 6.4e-143 511.5 440 61.1
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 3.2e-142 509.2 435 60.2
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 3.2e-142 509.2 431 60.6
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 4.2e-142 508.8 431 60.6
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.7e-141 506.1 412 63.6
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 3.5e-141 505.8 432 61.8
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 3.5e-141 505.8 432 61.8
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 6.0e-141 505.0 416 64.7
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 3.9e-140 502.3 429 60.8
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 6.6e-140 501.5 469 59.3
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 1.1e-139 500.7 431 59.4
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.5e-139 500.4 457 58.2
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 1.9e-139 500.0 435 62.1
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 6.2e-138 495.0 446 61.9
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 8.1e-138 494.6 446 58.5
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 2.0e-136 490.0 442 62.2
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 9.9e-136 487.6 433 59.4
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 9.9e-136 487.6 507 53.1
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 3.2e-134 482.6 386 66.6
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 1.6e-133 480.3 417 62.4
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 4.6e-133 478.8 437 59.3
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 3.9e-132 475.7 436 58.5
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 4.3e-131 472.2 472 56.4
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 8.1e-130 468.0 464 56.5
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 2.0e-128 463.4 468 54.5
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 3.8e-127 459.1 479 52.8
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 3.0e-124 449.5 385 62.6
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 3.3e-115 419.5 373 58.2
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.7e-111 407.1 447 53.0
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 3.3e-107 392.9 291 69.4
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 9.7e-107 391.3 449 48.6
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 1.8e-100 370.5 358 57.3
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 8.8e-100 368.2 521 41.7
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 6.3e-98 362.1 487 42.7
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 1.4e-97 360.9 308 63.3
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 2.7e-93 346.7 474 43.7
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.0e-92 344.7 312 60.6
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 1.4e-92 344.4 368 54.3
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 5.5e-78 295.8 613 34.6
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 5.7e-67 259.2 523 35.8
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 4.1e-57 226.5 454 34.8
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 6.0e-56 222.6 451 32.8
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 2.1e-53 214.2 493 32.0
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.5e-43 181.4 238 43.3
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 2.6e-43 180.6 161 59.6
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 3.7e-42 176.8 233 48.1
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 1.3e-34 151.8 209 43.1
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 3.1e-28 130.6 194 45.4
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 3.4e-27 127.1 194 44.3
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 8.4e-26 122.5 125 52.0
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 3.3e-22 110.5 106 59.4
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 6.9e-20 102.8 184 39.1
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 3.8e-18 97.1 74 56.8
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.8e-15 88.2 233 33.0
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 3.9e-15 87.0 87 50.6
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 1.9e-14 84.7 95 46.3
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 8.1e-13 79.3 110 42.7
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 1.2e-11 75.5 112 42.0
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 1.7e-10 71.6 131 42.7
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 2.9e-10 70.9 65 58.5
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 4.2e-09 67.0 56 64.3
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 3.5e-08 63.9 93 43.0
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 6.0e-08 63.2 39 66.7
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 7.9e-08 62.8 142 31.7
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.3e-07 62.0 93 41.9
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 3.9e-07 60.5 49 65.3
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 5.1e-07 60.1 79 49.4


User provided reference genes

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