Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 5.0e-108 394.4 195 100.0
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 5.7e-88 327.8 167 94.6
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.4e-81 306.6 167 88.0
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.0e-73 280.4 167 80.8
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 4.4e-64 248.4 157 73.9
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 3.7e-63 245.4 157 74.5
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 2.4e-62 242.7 157 73.2
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 2.4e-62 242.7 157 72.0
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 5.4e-62 241.5 157 71.3
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 5.4e-62 241.5 160 71.2
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 5.4e-62 241.5 157 71.3
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 5.4e-62 241.5 157 71.3
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 7.0e-62 241.1 157 72.6
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 7.0e-62 241.1 157 72.6
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 9.2e-62 240.7 157 73.2
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 9.2e-62 240.7 157 70.1
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.2e-61 240.4 160 71.2
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.6e-61 240.0 157 72.6
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.0e-61 239.6 157 69.4
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.0e-61 239.6 157 69.4
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 2.7e-61 239.2 157 72.0
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 2.7e-61 239.2 158 69.0
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.5e-61 238.8 157 72.0
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.5e-61 238.8 161 70.8
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 5.9e-61 238.0 157 71.3
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 5.9e-61 238.0 160 70.0
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 1.0e-60 237.3 157 69.4
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 1.3e-60 236.9 157 71.3
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 1.7e-60 236.5 157 70.1
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.7e-60 236.5 157 72.0
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 2.3e-60 236.1 157 68.2
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 3.0e-60 235.7 156 69.2
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 3.0e-60 235.7 160 71.2
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 3.0e-60 235.7 160 69.4
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 3.9e-60 235.3 160 68.8
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 3.9e-60 235.3 157 70.1
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 3.9e-60 235.3 157 70.1
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 5.0e-60 235.0 154 70.1
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 5.0e-60 235.0 160 70.0
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 6.6e-60 234.6 160 69.4
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 8.6e-60 234.2 157 70.7
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.5e-59 233.4 153 71.2
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 2.5e-59 232.6 157 70.1
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 2.5e-59 232.6 157 70.1
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 3.3e-59 232.3 156 69.2
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 3.3e-59 232.3 160 68.1
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 4.3e-59 231.9 160 70.6
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 9.5e-59 230.7 160 66.2
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 9.5e-59 230.7 160 67.5
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 9.5e-59 230.7 157 68.2
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 9.5e-59 230.7 160 68.1
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 9.5e-59 230.7 160 68.1
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 9.5e-59 230.7 160 69.4
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 9.5e-59 230.7 157 68.2
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.2e-58 230.3 160 68.1
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 1.2e-58 230.3 157 69.4
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 2.1e-58 229.6 157 67.5
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 2.8e-58 229.2 158 70.3
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 3.6e-58 228.8 158 68.4
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 3.6e-58 228.8 158 68.4
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 4.7e-58 228.4 160 68.1
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 4.7e-58 228.4 158 67.1
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 4.7e-58 228.4 158 69.6
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 6.2e-58 228.0 157 69.4
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 1.1e-57 227.3 157 68.8
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.1e-57 227.3 158 67.7
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.4e-57 226.9 160 67.5
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.8e-57 226.5 157 66.2
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.3e-57 226.1 160 66.9
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.3e-57 226.1 157 66.2
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 3.1e-57 225.7 160 68.1
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 4.0e-57 225.3 157 67.5
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 6.8e-57 224.6 160 68.8
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 8.9e-57 224.2 160 66.9
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 1.2e-56 223.8 161 67.7
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.0e-56 223.0 157 68.2
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 5.8e-56 221.5 160 66.2
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.7e-55 219.9 157 64.3
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 2.9e-55 219.2 161 66.5
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 3.7e-55 218.8 158 61.4
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.4e-54 216.9 157 63.7
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.9e-54 216.5 167 61.1
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 5.4e-54 214.9 158 62.7
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 5.4e-54 214.9 158 63.3
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 5.4e-54 214.9 186 56.5
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 7.0e-54 214.5 135 70.4
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.2e-53 213.8 157 63.1
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 6.0e-53 211.5 159 66.0
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 6.0e-53 211.5 157 61.8
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 6.0e-53 211.5 157 61.8
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 6.0e-53 211.5 157 65.0
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.7e-52 209.9 156 62.8
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 1.7e-52 209.9 157 61.1
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 1.7e-52 209.9 157 61.1
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.3e-52 209.5 157 61.8
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.3e-52 209.5 157 65.0
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 3.0e-52 209.1 157 59.9
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 3.9e-52 208.8 157 59.9
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 6.6e-52 208.0 157 59.2
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 6.6e-52 208.0 157 59.9
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.1e-51 207.2 167 59.3
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.1e-51 207.2 157 59.9
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.5e-51 206.8 156 61.5
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 1.5e-51 206.8 158 60.1
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 1.5e-51 206.8 158 60.1
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 2.5e-51 206.1 158 60.1
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 2.5e-51 206.1 158 60.1
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 2.5e-51 206.1 158 60.1
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.5e-51 206.1 157 63.7
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 2.5e-51 206.1 118 83.1
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 3.3e-51 205.7 157 63.1
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 4.3e-51 205.3 157 60.5
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.2e-50 203.8 157 61.1
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 1.6e-50 203.4 184 54.9
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 2.1e-50 203.0 139 68.3
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 2.8e-50 202.6 154 61.7
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 4.7e-50 201.8 160 56.9
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.1e-49 200.7 157 66.9
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.4e-49 200.3 157 57.3
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 1.8e-49 199.9 162 60.5
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.1e-49 199.1 186 57.0
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 4.0e-49 198.7 159 62.3
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 1.2e-48 197.2 157 56.1
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 2.0e-48 196.4 157 63.7
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 4.4e-48 195.3 157 60.5
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.3e-47 193.7 125 72.0
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 3.7e-47 192.2 170 58.8
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.9e-46 189.9 157 54.8
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.9e-46 189.9 157 54.8
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.6e-45 186.8 157 53.5
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 3.5e-45 185.7 153 58.8
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 1.3e-44 183.7 177 49.7
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.8e-41 173.3 158 50.0
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 6.8e-41 171.4 156 57.1
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 9.9e-40 167.5 119 66.4
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 6.4e-39 164.9 117 65.8
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.1e-38 162.2 120 62.5
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.6e-37 160.2 117 63.2
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 2.1e-37 159.8 117 60.7
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 1.4e-33 147.1 150 46.7
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 4.0e-33 145.6 87 74.7
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 9.9e-32 141.0 150 40.0
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 4.9e-31 138.7 139 44.6
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 4.2e-30 135.6 87 71.3
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 2.3e-28 129.8 143 44.1
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 2.5e-27 126.3 147 42.2
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 6.2e-26 121.7 84 67.9
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 4.2e-22 109.0 96 47.9
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.1e-20 102.1 88 55.7
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 1.2e-16 90.9 68 64.7
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 9.9e-16 87.8 69 60.9
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.9e-15 86.3 71 56.3
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.4e-14 84.0 140 30.0
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.1e-13 80.1 77 53.2
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 1.6e-10 70.5 47 63.8
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.0e-07 61.2 48 58.3
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.0e-07 61.2 48 58.3
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 1.7e-07 60.5 37 70.3
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 5.5e-06 55.5 51 58.8


User provided reference genes

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