Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 6.8e-212 740.3 358 100.0
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 4.1e-201 704.5 356 95.2
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 2.3e-183 645.6 362 87.6
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 1.1e-161 573.5 362 78.2
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 7.0e-116 421.4 334 63.5
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 1.0e-111 407.5 324 63.0
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 1.4e-111 407.1 325 62.8
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 2.3e-111 406.4 343 59.5
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 1.7e-109 400.2 302 64.2
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 2.2e-109 399.8 298 65.8
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 8.2e-109 397.9 298 65.1
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 1.1e-108 397.5 339 59.6
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 1.4e-108 397.1 309 62.8
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 7.0e-108 394.8 297 63.6
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 1.2e-107 394.0 314 60.8
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 5.9e-107 391.7 336 58.0
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 7.7e-107 391.3 300 66.0
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 1.0e-106 391.0 299 61.9
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 1.7e-106 390.2 304 62.8
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 2.2e-106 389.8 325 61.5
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 1.5e-105 387.1 302 63.6
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 4.2e-105 385.6 319 58.6
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 5.5e-105 385.2 315 58.7
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 5.5e-105 385.2 296 62.8
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 2.7e-104 382.9 304 61.8
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 3.6e-104 382.5 315 58.7
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 4.7e-104 382.1 321 57.3
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 4.7e-104 382.1 307 59.6
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 6.1e-104 381.7 317 60.9
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 1.0e-103 380.9 350 53.7
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 1.0e-103 380.9 324 58.0
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 1.4e-103 380.6 294 61.2
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 4.0e-103 379.0 296 60.8
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 6.8e-103 378.3 331 56.5
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 4.4e-102 375.6 318 57.5
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 5.7e-102 375.2 320 58.4
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 1.3e-101 374.0 321 57.6
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 1.7e-101 373.6 343 53.9
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 2.8e-101 372.9 329 57.4
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 2.4e-100 369.8 299 59.5
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 3.1e-100 369.4 327 55.7
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 3.1e-100 369.4 302 61.9
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 5.4e-100 368.6 329 55.0
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 2.0e-99 366.7 311 59.5
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 3.5e-99 365.9 330 54.8
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 3.5e-99 365.9 322 57.1
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 5.9e-99 365.2 316 57.0
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 5.9e-99 365.2 300 60.0
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 5.9e-99 365.2 348 52.9
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 1.3e-98 364.0 295 59.3
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 1.7e-98 363.6 298 59.4
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 1.1e-97 360.9 309 58.3
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 4.2e-97 359.0 346 52.6
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 4.2e-97 359.0 324 56.5
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 5.5e-97 358.6 295 60.0
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 7.2e-97 358.2 348 52.3
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 1.6e-96 357.1 344 52.9
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 1.6e-96 357.1 333 55.0
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 2.1e-96 356.7 297 56.9
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 3.6e-96 355.9 327 54.4
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 4.7e-96 355.5 296 56.8
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 4.7e-96 355.5 303 59.4
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 8.0e-96 354.8 277 61.7
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 6.8e-95 351.7 299 56.9
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 3.4e-94 349.4 271 59.4
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 5.7e-94 348.6 337 54.6
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 9.8e-94 347.8 271 63.8
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 2.8e-93 346.3 304 58.2
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 1.4e-92 344.0 307 59.0
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 1.4e-92 344.0 315 54.0
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 1.8e-92 343.6 342 53.8
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 3.1e-92 342.8 315 53.3
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 5.4e-92 342.0 311 55.6
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 4.5e-91 339.0 312 55.1
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 5.9e-91 338.6 312 56.4
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 6.6e-90 335.1 305 56.7
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 1.1e-89 334.3 242 65.7
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 4.3e-89 332.4 276 59.8
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 5.6e-89 332.0 242 64.9
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 1.2e-88 330.9 301 54.5
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 4.7e-88 328.9 326 51.2
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 1.0e-87 327.8 301 55.1
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 8.9e-87 324.7 330 51.5
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 2.6e-86 323.2 315 52.4
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.1e-84 317.8 240 62.5
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.1e-84 317.8 240 62.5
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 3.2e-84 316.2 289 54.7
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 1.2e-83 314.3 241 61.0
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 4.6e-83 312.4 249 63.1
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 6.2e-80 302.0 235 64.7
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 8.0e-80 301.6 379 42.7
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 3.1e-79 299.7 328 48.5
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 1.5e-78 297.4 322 48.1
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 8.9e-71 271.6 286 48.3
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 1.5e-70 270.8 329 44.7
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 1.7e-66 257.3 301 49.2
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.2e-62 244.6 186 65.6
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 1.5e-62 244.2 317 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 3.2e-60 236.5 300 45.0
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 7.8e-59 231.9 293 41.6
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 2.8e-56 223.4 307 40.4
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 3.4e-54 216.5 218 50.0
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 1.2e-51 208.0 281 43.8
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 4.3e-49 199.5 377 34.7
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 2.8e-48 196.8 168 58.9
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 1.8e-42 177.6 396 32.6
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 2.4e-31 140.6 273 35.5
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 1.7e-29 134.4 326 31.6
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 1.6e-27 127.9 107 56.1
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 3.5e-27 126.7 183 37.2
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 4.8e-24 116.3 136 44.9
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 9.0e-23 112.1 106 50.0
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 1.8e-18 97.8 119 42.9
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 2.8e-16 90.5 101 43.6
COL.COLO4_19820 Corchorus olitorius HOM05D001041 ORTHO05D000846 4.5e-06 56.6 51 52.9


User provided reference genes

Program Settings