Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 2.3e-81 305.4 149 100.0
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.4e-70 269.6 147 89.8
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 5.2e-65 251.1 146 81.5
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 4.1e-54 214.9 150 73.3
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 8.1e-34 147.5 152 53.9
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 1.5e-32 143.3 148 52.7
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 3.2e-30 135.6 154 46.1
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 2.1e-29 132.9 155 48.4
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 3.5e-29 132.1 148 47.3
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 1.0e-28 130.6 153 47.1
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.0e-28 130.6 150 47.3
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.0e-28 130.6 150 47.3
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.3e-28 130.2 149 49.0
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.7e-28 129.8 150 47.3
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 6.6e-28 127.9 148 45.9
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 6.6e-28 127.9 146 49.3
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.5e-27 126.7 146 47.9
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 4.3e-27 125.2 149 47.7
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 5.6e-27 124.8 146 46.6
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 5.6e-27 124.8 143 50.3
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 2.8e-26 122.5 138 47.1
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.8e-26 122.5 146 47.9
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 2.8e-26 122.5 148 47.3
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 2.8e-26 122.5 149 45.0
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 3.6e-26 122.1 148 47.3
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 4.7e-26 121.7 140 47.9
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 6.2e-26 121.3 141 51.8
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 8.1e-26 120.9 152 46.1
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 1.1e-25 120.6 146 45.2
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 1.8e-25 119.8 150 47.3
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 3.1e-25 119.0 149 45.6
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 3.1e-25 119.0 150 46.0
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 4.0e-25 118.6 157 49.0
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 4.0e-25 118.6 145 46.2
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 4.0e-25 118.6 150 43.3
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 4.0e-25 118.6 143 47.6
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 9.0e-25 117.5 145 44.8
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.6e-24 115.9 157 46.5
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 5.8e-24 114.8 159 40.9
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 9.9e-24 114.0 140 46.4
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 1.3e-23 113.6 146 44.5
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 1.7e-23 113.2 153 46.4
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 2.2e-23 112.8 126 49.2
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 2.2e-23 112.8 144 48.6
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 4.9e-23 111.7 119 52.9
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 4.9e-23 111.7 119 52.9
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 6.4e-23 111.3 137 46.0
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 6.4e-23 111.3 145 44.1
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 8.4e-23 110.9 155 45.8
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 8.4e-23 110.9 145 44.1
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 1.1e-22 110.5 139 47.5
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 1.1e-22 110.5 149 45.0
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.1e-22 110.5 147 43.5
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.9e-22 109.8 145 43.4
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 1.9e-22 109.8 146 42.5
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 1.9e-22 109.8 149 41.6
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.4e-22 109.4 148 45.3
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 2.4e-22 109.4 137 45.3
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 7.1e-22 107.8 146 43.8
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 7.1e-22 107.8 134 45.5
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 7.1e-22 107.8 120 53.3
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 9.3e-22 107.5 154 40.9
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 9.3e-22 107.5 139 46.0
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 1.2e-21 107.1 152 44.7
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.2e-21 107.1 119 47.9
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.2e-21 107.1 119 47.9
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 1.6e-21 106.7 142 43.0
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 2.1e-21 106.3 154 45.5
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 3.5e-21 105.5 128 50.0
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 6.0e-21 104.8 116 51.7
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.0e-20 104.0 137 45.3
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 1.3e-20 103.6 146 42.5
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 2.3e-20 102.8 119 47.9
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.0e-20 102.4 162 40.7
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.0e-20 102.4 117 46.2
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 6.6e-20 101.3 153 41.8
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.1e-19 100.5 119 48.7
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.1e-19 100.5 138 41.3
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 1.9e-19 99.8 137 43.8
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 2.5e-19 99.4 137 43.8
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 3.3e-19 99.0 124 46.8
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 4.3e-19 98.6 135 43.0
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.1e-18 96.3 152 39.5
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 3.6e-18 95.5 142 43.0
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 6.2e-18 94.7 118 48.3
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 1.1e-17 94.0 146 41.1
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 2.4e-17 92.8 146 39.0
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 3.1e-17 92.4 118 44.9
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 3.1e-17 92.4 133 41.4
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 5.3e-17 91.7 133 40.6
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 5.3e-17 91.7 137 41.6
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 6.9e-17 91.3 138 40.6
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 6.9e-17 91.3 133 43.6
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 6.9e-17 91.3 134 44.0
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 6.9e-17 91.3 141 42.6
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 9.0e-17 90.9 133 42.1
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 9.0e-17 90.9 133 42.1
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 9.0e-17 90.9 140 40.0
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 9.0e-17 90.9 141 42.6
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 9.0e-17 90.9 141 42.6
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 2.0e-16 89.7 103 43.7
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 2.0e-16 89.7 117 45.3
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 2.6e-16 89.4 133 42.1
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 2.6e-16 89.4 133 41.4
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 3.4e-16 89.0 120 40.0
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 4.5e-16 88.6 120 45.0
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 7.6e-16 87.8 133 40.6
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 7.6e-16 87.8 161 37.9
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 7.6e-16 87.8 146 42.5
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.7e-15 86.7 119 46.2
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 2.2e-15 86.3 128 41.4
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 3.8e-15 85.5 147 38.8
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 4.9e-15 85.1 126 41.3
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 4.9e-15 85.1 147 37.4
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 4.9e-15 85.1 130 38.5
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 6.4e-15 84.7 149 39.6
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 8.4e-15 84.3 102 46.1
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.4e-14 83.6 126 38.1
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 1.9e-14 83.2 147 41.5
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 4.2e-14 82.0 144 38.2
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 1.2e-13 80.5 132 39.4
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 1.2e-13 80.5 134 38.8
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.2e-13 80.5 138 41.3
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.2e-13 80.5 97 42.3
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 2.1e-13 79.7 134 39.6
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 3.5e-13 79.0 130 42.3
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 7.9e-13 77.8 135 35.6
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 1.0e-12 77.4 122 40.2
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.3e-12 77.0 50 70.0
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 3.0e-12 75.9 135 35.6
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 6.7e-12 74.7 102 44.1
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 6.7e-12 74.7 102 44.1
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 8.7e-12 74.3 143 39.9
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.9e-11 73.2 50 66.0
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.9e-11 73.2 88 50.0
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 4.3e-11 72.0 126 38.1
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 5.6e-11 71.6 145 35.2
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 5.6e-11 71.6 130 39.2
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 7.4e-11 71.2 50 66.0
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 9.6e-11 70.9 155 31.6
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.3e-10 70.5 40 77.5
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.6e-10 70.1 136 35.3
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 2.1e-10 69.7 137 34.3
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 2.8e-10 69.3 124 35.5
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 4.8e-10 68.6 133 41.4
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.1e-09 67.4 116 43.1
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 2.4e-09 66.2 106 41.5
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.1e-09 65.9 161 31.7
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 4.0e-09 65.5 95 36.8
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.3e-09 65.1 131 28.2
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.9e-09 64.7 143 30.1
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.9e-09 64.7 117 34.2
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.2e-08 63.9 116 37.1
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.2e-08 63.9 158 27.8
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 1.5e-08 63.5 94 39.4
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.5e-08 63.5 51 54.9
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 3.4e-08 62.4 136 31.6
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 4.5e-08 62.0 116 37.9
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.8e-08 61.6 130 34.6
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 3.8e-07 58.9 114 32.5
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.9e-07 58.5 129 30.2
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 4.9e-07 58.5 143 32.9
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.4e-06 56.2 129 31.8
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 4.2e-06 55.5 117 34.2
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.5e-06 55.1 160 26.9
Sc26g0003380 Simmondsia chinensis HOM05D004108 ORTHO05D004849 5.5e-06 55.1 55 56.4
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 9.3e-06 54.3 117 35.9
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 9.3e-06 54.3 115 33.0


User provided reference genes

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