Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 0.0e+00 1296.6 654 100.0
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 0.0e+00 1206.8 657 94.1
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 0.0e+00 1145.6 658 88.9
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 0.0e+00 1145.6 658 88.9
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 5.4e-311 1070.5 651 84.2
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 1.2e-302 1042.7 655 81.7
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 8.1e-296 1020.0 655 80.3
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 1.3e-232 810.1 654 64.8
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 9.4e-228 793.9 662 63.1
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 1.6e-227 793.1 682 63.5
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 2.1e-227 792.7 673 64.0
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 2.7e-227 792.3 658 64.0
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 1.7e-224 783.1 671 62.4
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 2.2e-224 782.7 606 67.0
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 2.2e-224 782.7 662 62.2
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 4.1e-223 778.5 668 61.4
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 2.0e-222 776.2 608 66.1
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 2.2e-221 772.7 658 61.2
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 5.0e-221 771.5 606 65.5
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 6.5e-221 771.2 624 64.7
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 1.1e-220 770.4 656 61.7
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 1.1e-220 770.4 653 62.6
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 1.9e-220 769.6 674 61.4
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 1.6e-219 766.5 674 61.1
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 4.7e-219 765.0 605 65.0
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 1.0e-218 763.8 664 63.3
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 3.0e-218 762.3 650 61.7
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 4.0e-218 761.9 667 61.0
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 6.8e-218 761.1 651 61.9
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 6.8e-218 761.1 660 62.4
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 3.4e-217 758.8 679 60.7
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 5.7e-217 758.1 669 59.6
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 5.7e-217 758.1 668 61.7
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 5.7e-217 758.1 679 59.2
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 9.8e-217 757.3 671 61.4
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 2.8e-216 755.7 653 62.3
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 8.3e-216 754.2 664 59.0
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 1.4e-215 753.4 663 60.5
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 3.5e-214 748.8 662 61.9
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 1.3e-213 746.9 602 66.3
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 4.3e-212 741.9 679 58.3
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 5.6e-212 741.5 555 66.7
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 9.5e-212 740.7 665 60.8
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 8.0e-211 737.6 653 61.1
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.4e-210 736.9 667 59.8
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.3e-210 736.1 652 60.7
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 3.0e-210 735.7 665 60.8
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.0e-209 733.0 650 60.9
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 7.5e-209 731.1 569 66.8
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 3.7e-208 728.8 666 59.5
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 2.0e-206 723.0 666 58.9
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 4.6e-206 721.8 660 57.0
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.3e-205 720.3 667 58.6
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.1e-204 717.2 627 63.3
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 4.3e-204 715.3 595 61.2
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 4.3e-204 715.3 683 56.8
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 6.8e-202 708.0 626 60.5
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 3.7e-200 702.2 589 62.8
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 1.1e-199 700.7 663 56.7
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 4.1e-199 698.7 668 57.0
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 4.1e-199 698.7 693 56.4
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 1.3e-197 693.7 660 58.2
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 1.1e-196 690.6 669 56.5
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 5.2e-194 681.8 678 57.4
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 1.2e-193 680.6 667 56.5
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 2.0e-193 679.9 660 57.9
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 2.6e-193 679.5 652 57.5
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 1.1e-191 674.1 663 56.9
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 1.3e-189 667.2 589 59.1
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 5.1e-189 665.2 675 54.7
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 1.7e-184 650.2 498 67.3
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 4.9e-184 648.7 670 53.0
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 2.4e-183 646.4 633 56.7
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 1.2e-182 644.0 611 57.1
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 1.2e-182 644.0 654 54.6
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 1.3e-181 640.6 680 53.8
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 8.6e-181 637.9 529 61.2
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 1.1e-180 637.5 655 55.0
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 1.1e-180 637.5 542 59.2
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.5e-180 637.1 664 54.7
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 4.3e-180 635.6 611 56.8
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 5.6e-180 635.2 663 52.9
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 5.6e-180 635.2 680 52.6
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 1.6e-179 633.6 677 52.3
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 4.0e-178 629.0 583 57.5
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 9.0e-178 627.9 655 53.4
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 9.0e-178 627.9 742 49.3
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.2e-177 627.5 657 53.4
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 3.4e-177 625.9 661 53.1
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 5.8e-177 625.2 655 54.0
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 7.6e-177 624.8 649 53.5
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 2.2e-176 623.2 665 52.9
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 4.9e-176 622.1 694 52.0
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 6.4e-176 621.7 608 55.9
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 4.6e-174 615.5 651 52.4
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 4.6e-174 615.5 651 52.4
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 7.8e-174 614.8 606 55.6
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 7.8e-174 614.8 610 54.8
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 2.5e-172 609.8 540 59.8
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 1.6e-171 607.1 536 58.8
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 4.5e-169 599.0 566 56.7
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.3e-168 597.4 445 67.6
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 8.4e-168 594.7 656 51.1
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 7.1e-167 591.7 651 50.8
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 2.7e-166 589.7 651 50.7
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 6.0e-166 588.6 632 52.4
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 1.8e-165 587.0 530 58.1
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 2.3e-165 586.6 668 50.4
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 5.1e-165 585.5 668 50.3
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 7.4e-164 581.6 577 53.7
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 5.8e-161 572.0 677 49.6
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 2.9e-160 569.7 667 50.4
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 6.0e-158 562.0 654 50.6
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 8.7e-157 558.1 611 49.9
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 5.5e-151 538.9 623 48.2
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 9.3e-151 538.1 621 47.8
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 4.1e-146 522.7 569 51.1
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 1.3e-144 517.7 649 46.8
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.7e-139 499.6 681 45.1
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 4.4e-124 449.5 571 45.4
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 4.4e-124 449.5 579 45.1
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 5.7e-116 422.5 623 44.9
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 4.1e-98 363.2 268 66.4
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 6.1e-94 349.4 238 70.2
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 6.1e-94 349.4 569 37.8
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 2.2e-91 340.9 319 56.7
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 8.3e-91 339.0 579 37.0
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 3.2e-90 337.0 563 36.9
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 7.0e-90 335.9 602 37.0
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 1.1e-85 322.0 411 43.6
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 5.8e-76 289.7 221 63.8
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 5.8e-76 289.7 329 48.3
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 2.2e-51 208.0 251 51.0
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 2.4e-50 204.5 125 76.8
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 4.2e-10 70.9 113 34.5
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 6.7e-08 63.5 65 52.3
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 2.0e-07 62.0 139 35.3
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 2.2e-06 58.5 101 34.7


User provided reference genes

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