Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.8e-50 202.6 124 100.0
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 4.8e-48 194.5 125 85.6
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.3e-40 169.9 128 75.8
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 1.0e-34 150.2 126 66.7
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 3.0e-26 122.1 126 58.7
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 5.3e-23 111.3 98 57.1
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 1.7e-21 106.3 100 56.0
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 8.5e-21 104.0 109 54.1
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 8.5e-21 104.0 109 54.1
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 1.1e-20 103.6 94 53.2
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 1.5e-20 103.2 78 62.8
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 3.2e-20 102.1 124 48.4
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 4.2e-20 101.7 100 57.0
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 4.2e-20 101.7 83 56.6
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 5.5e-20 101.3 108 52.8
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 7.2e-20 100.9 105 54.3
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 7.2e-20 100.9 109 53.2
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 9.4e-20 100.5 86 61.6
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.2e-19 100.1 98 54.1
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 1.2e-19 100.1 105 54.3
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 1.6e-19 99.8 103 60.2
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.1e-19 99.4 99 51.5
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 2.1e-19 99.4 84 57.1
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.6e-19 98.6 95 50.5
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 3.6e-19 98.6 99 53.5
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 4.7e-19 98.2 105 52.4
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 6.1e-19 97.8 96 54.2
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 8.0e-19 97.4 89 55.1
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 8.0e-19 97.4 77 61.0
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 8.0e-19 97.4 92 53.3
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 8.0e-19 97.4 103 53.4
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 1.0e-18 97.1 97 50.5
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 1.0e-18 97.1 87 55.2
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.8e-18 96.3 105 52.4
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.8e-18 96.3 87 51.7
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 1.8e-18 96.3 83 62.7
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 2.3e-18 95.9 99 53.5
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 2.3e-18 95.9 86 62.8
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 5.2e-18 94.7 98 52.0
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 5.2e-18 94.7 103 49.5
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 8.8e-18 94.0 84 56.0
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 8.8e-18 94.0 99 49.5
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 1.2e-17 93.6 94 52.1
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 1.2e-17 93.6 84 54.8
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.2e-17 93.6 70 67.1
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 1.2e-17 93.6 68 67.6
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 1.5e-17 93.2 97 49.5
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 2.0e-17 92.8 95 47.4
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 3.4e-17 92.0 106 50.0
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 4.4e-17 91.7 97 51.5
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 4.4e-17 91.7 70 70.0
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 9.8e-17 90.5 128 44.5
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.3e-16 90.1 61 65.6
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 1.7e-16 89.7 68 60.3
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 1.7e-16 89.7 68 60.3
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 1.7e-16 89.7 86 57.0
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.2e-16 89.4 91 54.9
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 2.2e-16 89.4 73 56.2
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 2.8e-16 89.0 85 52.9
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 2.8e-16 89.0 85 51.8
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 3.7e-16 88.6 79 55.7
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 4.8e-16 88.2 99 50.5
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 6.3e-16 87.8 83 53.0
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 6.3e-16 87.8 83 53.0
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 6.3e-16 87.8 81 63.0
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 8.3e-16 87.4 93 49.5
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 8.3e-16 87.4 96 49.0
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 8.3e-16 87.4 128 39.8
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 1.1e-15 87.0 86 55.8
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 1.4e-15 86.7 92 48.9
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 3.1e-15 85.5 96 49.0
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 3.1e-15 85.5 83 47.0
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.1e-15 85.1 91 56.0
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 4.1e-15 85.1 102 44.1
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 4.1e-15 85.1 71 57.7
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 5.4e-15 84.7 108 44.4
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 5.4e-15 84.7 92 42.4
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 7.0e-15 84.3 94 43.6
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 7.0e-15 84.3 100 48.0
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 9.1e-15 84.0 87 50.6
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 1.6e-14 83.2 91 45.1
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.6e-14 83.2 87 46.0
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 2.0e-14 82.8 102 46.1
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 2.0e-14 82.8 103 49.5
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 2.7e-14 82.4 107 47.7
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 2.7e-14 82.4 88 52.3
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 2.7e-14 82.4 106 44.3
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 4.5e-14 81.6 87 43.7
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 4.5e-14 81.6 60 60.0
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 5.9e-14 81.3 101 48.5
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.9e-14 81.3 62 59.7
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.9e-14 81.3 62 59.7
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 5.9e-14 81.3 62 59.7
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 7.7e-14 80.9 103 50.5
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 7.7e-14 80.9 101 50.5
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 1.0e-13 80.5 81 58.0
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.0e-13 80.5 92 53.3
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.3e-13 80.1 69 59.4
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.3e-13 80.1 103 43.7
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 2.2e-13 79.3 83 49.4
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 3.8e-13 78.6 83 48.2
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 3.8e-13 78.6 83 54.2
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 5.0e-13 78.2 96 42.7
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 5.0e-13 78.2 87 52.9
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 5.0e-13 78.2 107 44.9
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 6.5e-13 77.8 72 52.8
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.5e-12 76.6 96 42.7
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 1.5e-12 76.6 86 44.2
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.5e-12 76.6 91 49.5
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.9e-12 76.3 87 49.4
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.9e-12 76.3 87 49.4
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 4.2e-12 75.1 90 48.9
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 7.2e-12 74.3 79 57.0
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 9.4e-12 73.9 104 48.1
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 9.4e-12 73.9 86 48.8
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 1.2e-11 73.6 104 47.1
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 1.2e-11 73.6 70 54.3
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.6e-11 73.2 87 47.1
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.6e-11 73.2 89 49.4
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.6e-11 73.2 105 46.7
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 2.1e-11 72.8 126 35.7
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 2.7e-11 72.4 61 54.1
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 2.7e-11 72.4 104 44.2
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 3.6e-11 72.0 104 47.1
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 4.7e-11 71.6 81 50.6
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 4.7e-11 71.6 41 68.3
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 1.4e-10 70.1 113 41.6
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 1.4e-10 70.1 58 56.9
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 1.4e-10 70.1 74 47.3
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 5.2e-10 68.2 85 45.9
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 8.8e-10 67.4 44 61.4
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 8.8e-10 67.4 44 63.6
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.2e-09 67.0 40 65.0
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.0e-09 66.2 43 60.5
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.0e-09 66.2 43 60.5
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 2.0e-09 66.2 55 54.5
Peaxi162Scf00003g01911 Petunia axillaris HOM05D002914 ORTHO05D003196 2.8e-08 62.4 91 40.7
unitig_699.g19875 Utricularia gibba HOM05D002914 ORTHO05D003196 6.3e-08 61.2 81 40.7
Lj4g0007898 Lotus japonicus HOM05D002914 ORTHO05D003196 1.8e-07 59.7 87 44.8
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 3.1e-07 58.9 92 33.7
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 4.1e-07 58.5 69 43.5
ATR0730G198 Amborella trichopoda HOM05D007960 ORTHO05D010026 1.2e-06 57.0 78 38.5
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.2e-06 57.0 72 37.5
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 1.2e-06 57.0 69 37.7
unitig_22.g6856 Utricularia gibba HOM05D002914 ORTHO05D003196 2.0e-06 56.2 95 43.2
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 3.5e-06 55.5 77 35.1


User provided reference genes

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