Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 3.6e-117 424.9 203 100.0
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 1.9e-110 402.5 203 93.6
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 2.9e-103 378.6 204 88.7
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 3.7e-98 361.7 206 85.4
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 4.9e-82 308.1 202 71.8
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 2.0e-80 302.8 199 72.4
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 2.3e-79 299.3 202 70.3
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 1.5e-78 296.6 203 70.0
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 7.3e-78 294.3 193 76.2
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.2e-77 293.5 202 70.3
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 1.6e-77 293.1 203 70.4
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 2.8e-77 292.4 202 67.8
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 3.6e-77 292.0 202 69.8
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 2.3e-76 289.3 197 69.0
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 2.3e-76 289.3 204 70.1
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 5.2e-76 288.1 207 66.7
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 8.9e-76 287.3 201 69.2
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.2e-75 287.0 207 66.7
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 1.2e-75 287.0 203 69.0
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 2.0e-75 286.2 204 68.1
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 2.6e-75 285.8 200 66.5
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 2.2e-74 282.7 201 68.2
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 2.9e-74 282.3 205 66.8
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 3.7e-74 282.0 202 68.3
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 3.7e-74 282.0 209 66.5
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 6.4e-74 281.2 201 66.7
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 1.1e-73 280.4 202 66.8
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 3.2e-73 278.9 202 66.3
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 5.4e-73 278.1 206 68.0
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 3.5e-72 275.4 202 66.3
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 4.6e-72 275.0 206 64.6
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.0e-71 273.9 202 66.8
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.3e-71 273.5 203 66.5
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 3.9e-71 271.9 213 63.8
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 8.6e-71 270.8 219 63.0
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 2.5e-70 269.2 202 63.4
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 4.3e-70 268.5 204 64.7
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 5.6e-70 268.1 202 66.3
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 5.6e-70 268.1 203 68.0
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 7.3e-70 267.7 206 63.1
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 9.5e-70 267.3 206 64.1
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 1.2e-69 266.9 203 64.0
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 2.8e-69 265.8 204 63.2
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 8.1e-69 264.2 206 65.0
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 1.4e-68 263.5 190 64.7
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 1.4e-68 263.5 202 62.4
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 1.4e-68 263.5 202 62.4
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 1.8e-68 263.1 202 63.9
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 3.1e-68 262.3 203 62.6
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 4.0e-68 261.9 202 63.4
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 1.7e-66 256.5 210 60.5
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 3.7e-66 255.4 222 58.6
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 3.7e-66 255.4 210 62.4
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 4.9e-66 255.0 205 62.9
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 4.9e-66 255.0 204 63.2
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.1e-65 253.8 220 58.2
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 4.1e-65 251.9 201 59.7
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 9.2e-65 250.8 207 61.4
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 9.2e-65 250.8 204 62.7
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 1.6e-64 250.0 202 59.4
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 2.1e-64 249.6 198 61.6
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 2.7e-64 249.2 212 57.5
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 3.5e-64 248.8 192 63.5
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 6.0e-64 248.1 215 58.1
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 1.3e-63 246.9 200 58.5
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 3.9e-63 245.4 201 59.7
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 3.9e-63 245.4 200 58.0
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 6.6e-63 244.6 200 59.5
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.9e-62 243.0 200 59.0
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 1.9e-62 243.0 208 57.7
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 4.3e-62 241.9 198 58.6
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 7.3e-62 241.1 174 68.4
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 9.6e-62 240.7 198 58.1
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 1.2e-61 240.4 204 59.8
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.6e-61 240.0 200 58.5
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 1.6e-61 240.0 201 57.2
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 2.8e-61 239.2 195 59.5
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 2.8e-61 239.2 200 60.0
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 2.8e-61 239.2 197 58.9
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 4.7e-61 238.4 197 61.4
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 6.2e-61 238.0 201 58.7
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 1.1e-60 237.3 199 57.8
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 1.1e-60 237.3 195 58.5
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 1.1e-60 237.3 199 57.8
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 1.1e-60 237.3 208 55.8
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 1.1e-60 237.3 201 58.7
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 1.8e-60 236.5 212 57.1
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 2.4e-60 236.1 199 57.3
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 3.1e-60 235.7 205 57.1
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 1.5e-59 233.4 205 58.0
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 2.0e-59 233.0 205 56.6
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 2.2e-58 229.6 168 69.0
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 2.3e-55 219.5 197 56.3
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 3.9e-55 218.8 207 53.6
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 8.7e-55 217.6 221 53.8
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 4.3e-54 215.3 177 60.5
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 2.8e-53 212.6 172 62.2
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 1.4e-52 210.3 187 57.2
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 1.5e-46 190.3 154 61.0
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 1.3e-45 187.2 174 56.9
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 4.8e-45 185.3 159 58.5
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 8.1e-45 184.5 155 58.7
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 1.1e-44 184.1 154 61.7
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.4e-44 183.0 203 48.3
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 3.2e-41 172.6 117 66.7
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 5.5e-41 171.8 207 45.9
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 9.3e-41 171.0 231 39.8
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 9.3e-41 171.0 241 42.3
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 4.6e-40 168.7 196 46.9
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.4e-36 157.1 120 65.8
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 2.5e-33 146.4 156 52.6
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 2.6e-27 126.3 110 54.5
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 1.1e-25 120.9 119 53.8
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 1.0e-23 114.4 124 47.6
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 6.7e-23 111.7 125 51.2
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 4.5e-19 99.0 64 73.4
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.5e-14 84.0 58 72.4
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 3.3e-14 82.8 51 74.5
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 5.3e-12 75.5 149 35.6
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 1.6e-08 63.9 98 38.8
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 2.3e-07 60.1 86 36.0
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 3.9e-07 59.3 73 38.4
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 6.7e-07 58.5 68 45.6


User provided reference genes

Program Settings