Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 1.3e-174 616.3 313 100.0
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 6.2e-161 570.9 313 93.9
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 1.8e-155 552.7 313 91.4
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 4.3e-138 495.0 311 83.9
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 1.2e-108 397.1 306 69.3
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 1.6e-108 396.7 306 69.6
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 8.8e-107 391.0 305 67.2
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 8.8e-107 391.0 305 67.2
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 1.2e-106 390.6 303 67.7
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 2.0e-106 389.8 302 68.5
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 9.7e-106 387.5 250 77.2
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 9.7e-106 387.5 312 67.6
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 2.2e-105 386.3 303 68.3
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 3.7e-105 385.6 298 65.8
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 8.2e-105 384.4 307 65.5
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.1e-104 384.0 307 67.4
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 4.1e-104 382.1 307 66.1
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 5.3e-104 381.7 304 68.1
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 2.7e-103 379.4 307 65.8
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 4.5e-103 378.6 303 68.0
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 5.9e-103 378.3 299 66.6
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 1.7e-102 376.7 295 68.1
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 2.2e-102 376.3 303 67.7
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 2.2e-102 376.3 309 66.7
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 8.5e-102 374.4 303 67.7
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 2.5e-101 372.9 304 64.8
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 4.2e-101 372.1 307 66.8
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 5.5e-101 371.7 312 63.1
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 1.2e-100 370.5 306 64.1
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 2.7e-100 369.4 301 66.4
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 1.0e-99 367.5 258 71.7
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.0e-99 367.5 250 73.6
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 1.4e-99 367.1 304 65.1
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 2.3e-99 366.3 273 71.8
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 4.0e-99 365.5 305 65.6
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 8.8e-99 364.4 308 63.0
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 3.4e-98 362.5 272 67.3
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 5.7e-98 361.7 293 66.2
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 1.3e-97 360.5 263 68.8
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.7e-97 360.1 261 70.1
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 1.7e-97 360.1 291 66.7
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 1.7e-97 360.1 298 64.1
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 2.2e-97 359.8 295 65.4
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 3.7e-97 359.0 338 59.2
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 3.7e-97 359.0 308 62.7
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 3.7e-97 359.0 305 61.6
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 4.8e-97 358.6 296 63.5
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 4.8e-97 358.6 314 60.8
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 1.8e-96 356.7 231 75.8
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.8e-96 356.7 276 67.0
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 2.4e-96 356.3 308 60.7
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 2.4e-96 356.3 260 71.2
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 5.4e-96 355.1 265 68.7
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 9.1e-96 354.4 265 68.3
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.6e-95 353.6 307 60.6
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 1.6e-95 353.6 293 65.5
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 2.0e-95 353.2 255 68.6
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 5.9e-95 351.7 297 65.7
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.3e-94 349.7 292 62.7
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 8.6e-94 347.8 264 66.7
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 1.5e-93 347.1 252 68.3
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 7.2e-93 344.7 244 70.5
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 7.2e-93 344.7 286 63.6
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 3.6e-92 342.4 308 59.1
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 6.1e-92 341.7 275 63.3
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 1.0e-91 340.9 291 60.5
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.4e-91 340.5 258 68.2
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 1.8e-91 340.1 304 59.2
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 4.0e-91 339.0 294 64.6
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 6.8e-91 338.2 257 67.3
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 2.6e-90 336.3 288 62.2
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 5.7e-90 335.1 250 66.8
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 9.8e-90 334.3 301 60.1
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 9.8e-90 334.3 230 70.0
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 1.3e-89 334.0 288 61.8
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 2.8e-89 332.8 237 70.9
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 3.7e-89 332.4 276 64.9
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 6.3e-89 331.6 289 59.9
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 2.4e-88 329.7 256 64.5
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 1.2e-87 327.4 256 64.1
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 1.2e-87 327.4 259 63.3
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 1.6e-87 327.0 256 64.1
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.6e-87 327.0 339 52.8
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 3.5e-87 325.9 294 58.8
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 3.5e-87 325.9 300 59.3
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 5.9e-87 325.1 355 51.8
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 1.7e-86 323.6 294 58.5
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 2.5e-85 319.7 305 56.1
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 5.6e-85 318.5 245 62.9
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 2.8e-84 316.2 305 58.4
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 8.0e-84 314.7 256 62.1
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 3.1e-83 312.8 421 45.8
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 5.8e-82 308.5 382 49.7
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 6.4e-81 305.1 225 66.2
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 9.5e-77 291.2 232 64.2
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 4.7e-76 288.9 249 57.0
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 8.9e-75 284.6 254 59.4
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 8.9e-75 284.6 253 54.5
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 2.0e-74 283.5 190 73.7
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 5.8e-74 282.0 332 50.0
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 1.3e-73 280.8 213 67.1
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 1.9e-72 276.9 187 72.2
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 1.7e-70 270.4 251 57.0
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 2.3e-70 270.0 275 52.4
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 1.8e-67 260.4 234 55.1
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 3.5e-63 246.1 313 47.3
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 7.8e-63 245.0 196 61.7
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 5.1e-62 242.3 307 50.2
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 6.6e-62 241.9 214 61.7
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 1.1e-59 234.6 256 49.2
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 8.9e-59 231.5 275 45.8
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 1.7e-54 217.2 251 47.0
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.5e-53 214.2 205 58.0
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.5e-53 213.4 172 63.4
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 2.6e-50 203.4 142 75.4
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.1e-48 198.0 246 45.1
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 7.8e-47 191.8 141 63.1
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 6.6e-46 188.7 251 43.0
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 1.0e-38 164.9 122 68.9
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 1.1e-37 161.4 198 46.0
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 1.1e-29 134.8 162 45.1
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 9.3e-24 115.2 96 54.2
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 2.0e-18 97.4 78 59.0
Lsat_1_v5_gn_9_32780 Lactuca sativa HOM05D000379 ORTHO05D024309 4.7e-07 59.7 113 35.4


User provided reference genes

Program Settings