Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 1.4e-204 716.1 361 100.0
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 3.9e-199 698.0 361 96.7
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.5e-187 659.4 373 90.3
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 1.9e-182 642.5 361 89.2
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 5.3e-164 581.3 354 78.0
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 2.7e-160 568.9 362 76.0
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 6.1e-160 567.8 364 76.1
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 3.0e-159 565.5 362 75.4
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 7.4e-158 560.8 361 74.2
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 8.2e-157 557.4 362 74.3
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.4e-156 556.6 361 75.3
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 1.4e-156 556.6 418 67.7
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.8e-156 556.2 361 76.2
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 6.9e-156 554.3 363 73.0
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 9.1e-156 553.9 364 72.3
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 1.5e-155 553.1 362 74.0
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 2.6e-155 552.4 364 76.1
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 4.5e-155 551.6 362 73.8
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 5.9e-155 551.2 365 74.8
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-154 549.3 363 72.7
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 2.2e-154 549.3 363 73.6
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.9e-154 548.9 363 72.7
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 6.5e-154 547.7 359 73.3
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 9.4e-153 543.9 359 73.5
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.2e-152 543.5 360 73.1
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-151 540.4 363 71.6
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.0e-151 540.4 362 72.1
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.0e-151 540.4 363 72.2
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 1.8e-151 539.7 360 72.5
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 3.0e-151 538.9 362 72.7
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 3.9e-151 538.5 369 69.1
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 8.8e-151 537.3 362 72.1
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 8.8e-151 537.3 374 70.1
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 1.5e-150 536.6 360 71.1
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.5e-150 536.6 362 70.4
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.0e-150 536.2 362 71.3
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 2.6e-150 535.8 363 70.5
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 2.6e-150 535.8 362 70.4
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 3.3e-150 535.4 361 72.9
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 3.3e-150 535.4 365 72.1
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 4.4e-150 535.0 369 69.4
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 4.4e-150 535.0 362 72.1
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 5.7e-150 534.6 365 72.6
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 9.7e-150 533.9 362 71.5
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.7e-149 533.1 361 72.0
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 2.2e-149 532.7 362 69.6
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 4.8e-149 531.6 360 70.6
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 4.8e-149 531.6 369 69.1
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 6.3e-149 531.2 362 71.0
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 8.2e-149 530.8 357 70.9
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 2.4e-148 529.3 360 70.0
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 7.0e-148 527.7 361 71.2
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 9.1e-148 527.3 359 69.6
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.6e-147 526.6 366 72.1
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 2.0e-147 526.2 360 69.7
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 2.6e-147 525.8 360 69.4
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 3.5e-147 525.4 360 69.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.3e-146 523.5 360 69.7
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.7e-146 523.1 361 70.6
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.7e-146 523.1 352 71.6
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.7e-146 523.1 352 71.6
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 6.5e-146 521.2 359 69.1
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 8.5e-146 520.8 360 68.6
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.6e-144 516.5 360 68.6
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 6.1e-144 514.6 358 69.3
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 1.0e-143 513.8 358 70.4
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.4e-143 513.5 363 68.3
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.4e-143 513.5 393 65.1
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 5.2e-143 511.5 360 68.6
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 6.7e-143 511.1 349 70.8
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.5e-142 510.0 363 68.0
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.6e-142 509.2 396 64.1
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 4.4e-142 508.4 352 69.9
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 5.7e-142 508.1 320 75.9
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.3e-141 506.9 357 70.9
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 4.8e-141 505.0 352 69.3
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.4e-140 503.4 358 70.4
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 7.0e-140 501.1 359 65.7
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.0e-140 501.1 381 65.1
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.0e-138 497.3 363 66.7
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.2e-138 496.1 361 69.5
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 6.5e-138 494.6 361 67.6
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.5e-137 493.4 355 67.9
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 3.2e-137 492.3 362 67.7
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.6e-136 488.8 385 62.3
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.7e-136 488.4 385 62.3
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 8.0e-136 487.6 385 62.3
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 3.0e-135 485.7 397 62.0
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 4.4e-134 481.9 325 72.0
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 2.2e-133 479.6 316 72.2
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.7e-133 478.8 362 66.3
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 3.5e-131 472.2 374 65.2
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 4.5e-131 471.9 354 65.5
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.3e-130 470.3 360 64.7
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 1.7e-130 469.9 362 63.5
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 5.0e-130 468.4 315 72.4
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 1.1e-129 467.2 363 64.5
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 1.1e-129 467.2 363 64.5
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 1.6e-128 463.4 363 63.4
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 6.8e-127 458.0 300 74.3
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 2.0e-126 456.4 292 76.4
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 7.5e-126 454.5 359 61.8
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.7e-123 446.0 360 61.1
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.3e-122 443.0 354 62.7
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 4.7e-120 435.3 297 73.4
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 2.9e-117 426.0 297 70.0
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.4e-117 424.9 327 64.5
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 1.8e-116 423.3 291 69.4
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.7e-109 400.2 385 55.1
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.3e-106 390.6 360 55.6
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.1e-105 387.5 362 57.2
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 4.7e-104 382.1 360 53.1
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.8e-103 380.2 287 63.1
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 8.9e-103 377.9 284 64.8
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 2.2e-101 373.2 350 53.1
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.9e-100 370.2 362 55.5
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 2.1e-99 366.7 361 54.0
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 1.9e-97 360.1 354 55.6
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 2.3e-95 353.2 340 50.9
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.5e-94 350.5 311 54.0
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 3.4e-94 349.4 335 51.0
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.4e-94 349.4 269 67.3
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 9.9e-94 347.8 365 52.1
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.4e-63 247.7 154 75.3
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 1.1e-60 238.0 327 38.8
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 7.2e-52 208.8 137 71.5
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 3.3e-49 199.9 374 35.0
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.3e-37 161.4 128 64.1
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.8e-37 159.8 137 58.4
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 9.4e-36 155.2 342 32.5
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 6.7e-34 149.1 198 42.4
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 6.3e-32 142.5 103 68.0
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 3.1e-31 140.2 136 53.7
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.8e-29 133.3 92 69.6
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 6.5e-29 132.5 116 61.2
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-28 131.7 92 68.5
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.2e-26 122.9 87 67.8
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.7e-26 122.5 83 71.1
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 7.5e-25 119.0 349 26.4
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.5e-21 105.5 79 64.6
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.2e-20 103.6 79 63.3
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-20 103.2 78 64.1
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-20 103.2 78 64.1
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.4e-20 102.1 78 64.1
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 1.6e-19 101.3 104 58.7
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-19 101.3 78 62.8
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.1e-19 100.9 78 61.5
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.6e-19 100.1 79 60.8
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.7e-19 99.8 78 62.8
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.1e-19 99.4 70 67.1
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 8.0e-19 99.0 110 47.3
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-18 98.2 79 59.5
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 4.4e-17 93.2 110 45.5
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 9.8e-17 92.0 87 55.2
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.8e-16 90.5 101 49.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.1e-15 88.6 75 60.0
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 7.0e-15 85.9 60 73.3
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 4.5e-14 83.2 57 77.2
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 4.5e-14 83.2 67 68.7
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.6e-13 79.0 56 67.9
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.3e-10 70.9 45 73.3
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-09 68.6 52 67.3
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 6.3e-08 62.8 43 72.1
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 4.1e-07 60.1 42 71.4
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-06 58.5 42 66.7
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-06 58.5 43 65.1
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 1.6e-06 58.2 43 67.4
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 3.5e-06 57.0 48 58.3
Sabra07G0018600 Salix brachista HOM05D004259 ORTHO05D003320 7.8e-06 55.8 60 55.0
Sabra18G0120100 Salix brachista HOM05D001081 ORTHO05D003320 7.8e-06 55.8 60 55.0


User provided reference genes

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