Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010818.2 Cucumis melo HOM05D006600 ORTHO05D008446 1.3e-175 619.8 355 100.0
CsaV3_2G026260 Cucumis sativus L. HOM05D006600 ORTHO05D008446 3.4e-155 552.0 328 96.6
ClCG08G016350 Citrullus lanatus HOM05D006600 ORTHO05D008446 6.6e-151 537.7 328 93.9
Sed0004073 Sechium edule HOM05D006600 ORTHO05D008446 2.1e-141 506.1 328 89.3
QL12p037547 Quercus lobata HOM05D006600 ORTHO05D008446 9.6e-134 480.7 327 70.6
Cfa013668 Carpinus fangiana HOM05D006600 ORTHO05D008446 2.4e-132 476.1 328 84.5
THA.LOC104807092 Tarenaya hassleriana HOM05D006600 ORTHO05D008446 1.5e-131 473.4 321 70.4
Rhsim07G0222000 Rhododendron simsii HOM05D006600 ORTHO05D008446 8.4e-130 467.6 328 80.5
Prupe.1G425800 Prunus persica HOM05D006600 ORTHO05D008446 1.1e-129 467.2 328 82.6
CiPaw.08G048500 Carya illinoinensis HOM05D006600 ORTHO05D008446 1.4e-129 466.8 325 70.2
Thecc.08G092000 Theobroma cacao HOM05D006600 ORTHO05D008446 3.2e-129 465.7 326 74.5
TWI56G0382 Tripterygium wilfordii HOM05D006600 ORTHO05D008446 5.4e-129 464.9 324 83.0
arahy.Tifrunner.gnm1.ann1.UTGV4K Arachis hypogaea HOM05D006600 ORTHO05D008446 9.3e-129 464.2 328 82.6
CSS0036700 Camellia sinensis var. sinensis HOM05D006600 ORTHO05D008446 2.7e-128 462.6 328 81.1
Atru.chr13.803 Acer truncatum HOM05D006600 ORTHO05D008446 3.5e-128 462.2 326 82.2
Gorai.009G217900 Gossypium raimondii HOM05D006600 ORTHO05D008446 3.5e-128 462.2 326 83.1
Dinv44978 Davidia involucrata HOM05D006600 ORTHO05D008446 7.9e-128 461.1 328 81.4
Sabra14G0012400 Salix brachista HOM05D006600 ORTHO05D008446 1.0e-127 460.7 326 66.0
arahy.Tifrunner.gnm1.ann1.H62KW4 Arachis hypogaea HOM05D006600 ORTHO05D008446 1.3e-127 460.3 328 82.3
TAR625G0631 Trochodendron aralioides HOM05D006600 ORTHO05D008446 3.9e-127 458.8 328 81.4
Psat5g038240 Pisum sativum HOM05D006600 ORTHO05D008446 6.7e-127 458.0 324 67.6
Manes.18G044200 Manihot esculenta HOM05D006600 ORTHO05D008446 8.7e-127 457.6 328 67.4
Ciclev10001599m.g Citrus clementina HOM05D006600 ORTHO05D008446 1.5e-126 456.8 326 81.6
Lj1g0008642 Lotus japonicus HOM05D006600 ORTHO05D008446 1.5e-126 456.8 326 81.3
Haze_22302 Corylus avellana HOM05D006600 ORTHO05D008446 2.5e-126 456.1 342 77.2
Gohir.D05G211400 Gossypium hirsutum HOM05D006600 ORTHO05D008446 2.5e-126 456.1 326 82.2
MD08G1088100 Malus domestica HOM05D006600 ORTHO05D008446 4.3e-126 455.3 328 81.1
Medtr3g102800 Medicago truncatula HOM05D006600 ORTHO05D008446 4.3e-126 455.3 324 67.3
TPR.G33718 Trifolium pratense HOM05D006600 ORTHO05D008446 4.3e-126 455.3 322 67.1
Lalb_Chr23g0267431 Lupinus albus HOM05D006600 ORTHO05D008446 5.6e-126 454.9 328 80.5
Glyma.06G045000 Glycine max HOM05D006600 ORTHO05D008446 7.4e-126 454.5 324 80.9
Gohir.A05G207900 Gossypium hirsutum HOM05D006600 ORTHO05D008446 1.3e-125 453.8 326 81.6
MBI16_g13383_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D008446 8.1e-125 451.1 325 68.0
Phvul.009G070400 Phaseolus vulgaris HOM05D006600 ORTHO05D008446 1.8e-124 449.9 324 80.6
vmacro04585 Vaccinium macrocarpon HOM05D006600 ORTHO05D008446 1.8e-124 449.9 328 80.2
PGR083G0558 Punica granatum HOM05D006600 ORTHO05D008446 2.4e-124 449.5 328 78.0
CANSAT35G1599 Cannabis sativa HOM05D006600 ORTHO05D008446 3.1e-124 449.1 328 81.7
Ca_15912_v3 Cicer arietinum L. HOM05D006600 ORTHO05D008446 3.1e-124 449.1 324 77.5
PSO675G8764 Papaver somniferum HOM05D006600 ORTHO05D008446 4.0e-124 448.7 328 65.9
PSO541G2868 Papaver somniferum HOM05D006600 ORTHO05D008446 6.9e-124 448.0 328 72.9
MSTRG.1040 Avicennia marina HOM05D006600 ORTHO05D008446 9.0e-124 447.6 324 77.2
VMungo1309G2568 Vigna mungo HOM05D006600 ORTHO05D008446 9.0e-124 447.6 324 80.2
Migut.C00501 Erythranthe guttata HOM05D006600 ORTHO05D008446 1.5e-123 446.8 324 80.6
Oeu050861.1 Olea europaea HOM05D006600 ORTHO05D008446 2.6e-123 446.0 324 68.2
Ah.15g092540 Amaranthus hybridus HOM05D006600 ORTHO05D008446 3.4e-123 445.7 323 64.7
Cc10_g05550 Coffea canephora HOM05D006600 ORTHO05D008446 7.6e-123 444.5 328 79.3
Glyma.04G044500 Glycine max HOM05D006600 ORTHO05D008446 1.3e-122 443.7 324 65.1
Actinidia38095 Actinidia chinensis HOM05D006600 ORTHO05D008446 2.9e-122 442.6 327 79.5
GSVIVG01009372001 Vitis vinifera HOM05D006600 ORTHO05D008446 3.8e-122 442.2 239 83.7
DCAR_020080 Daucus carota HOM05D006600 ORTHO05D008446 6.4e-122 441.4 328 76.8
Eucgr.F00122 Eucalyptus grandis HOM05D006600 ORTHO05D008446 1.4e-121 440.3 328 79.3
Nitab4.5_0000934g0020 Nicotiana tabacum HOM05D006600 ORTHO05D008446 1.4e-121 440.3 328 64.6
Lsat_1_v5_gn_6_112481 Lactuca sativa HOM05D006600 ORTHO05D008446 1.9e-121 439.9 327 78.3
CDE04G0491 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 2.5e-121 439.5 328 64.9
Peaxi162Scf00081g00125 Petunia axillaris HOM05D006600 ORTHO05D008446 2.5e-121 439.5 324 78.7
SalBow7G4697 Salvia bowleyana HOM05D006600 ORTHO05D008446 5.5e-121 438.3 324 79.0
FAN20G2273 Fragaria x ananassa HOM05D006600 ORTHO05D008446 7.1e-121 438.0 324 73.5
Hma1.2p1_0923F.1_g236990 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 9.3e-121 437.6 328 79.6
RcHm_v2.0_Chr6g0309231 Rosa chinensis HOM05D006600 ORTHO05D008446 9.3e-121 437.6 324 79.6
Solyc04g078120.3 Solanum lycopersicum HOM05D006600 ORTHO05D008446 9.3e-121 437.6 328 67.7
HanXRQChr10g0304021 Helianthus annuus HOM05D006600 ORTHO05D008446 1.6e-120 436.8 325 64.6
Nitab4.5_0003228g0070 Nicotiana tabacum HOM05D006600 ORTHO05D008446 2.1e-120 436.4 328 64.6
PGSC0003DMG400021533 Solanum tuberosum HOM05D006600 ORTHO05D008446 3.5e-120 435.6 328 75.3
Sopen04g031730 Solanum pennellii HOM05D006600 ORTHO05D008446 4.6e-120 435.3 328 65.9
FvH4_2g33350 Fragaria vesca HOM05D006600 ORTHO05D008446 1.0e-119 434.1 324 79.0
FAN15G1504 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.8e-119 433.3 324 79.0
FAN24G1058 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.8e-119 433.3 324 79.0
SGA_v2.0_scaffold244G44349 Striga asiatica HOM05D006600 ORTHO05D008446 1.8e-119 433.3 324 63.9
Aqoxy6G02751 Aquilegia oxysepala HOM05D006600 ORTHO05D008446 3.9e-119 432.2 324 79.0
AUR62038783 Chenopodium quinoa HOM05D006600 ORTHO05D008446 5.1e-119 431.8 322 63.7
unitig_62.g23648 Utricularia gibba HOM05D006600 ORTHO05D008446 6.7e-119 431.4 323 62.8
Lj4A761T87 Lonicera japonica HOM05D006600 ORTHO05D008446 8.7e-119 431.0 239 79.9
Carub.0008s2674 Capsella rubella HOM05D006600 ORTHO05D008446 1.1e-118 430.6 322 77.3
AT5G65860 Arabidopsis thaliana HOM05D006600 ORTHO05D008446 1.9e-118 429.9 331 69.8
Cpa.g.sc21.115 Carica papaya HOM05D006600 ORTHO05D008446 4.3e-118 428.7 237 82.7
AUR62037454 Chenopodium quinoa HOM05D006600 ORTHO05D008446 2.1e-117 426.4 325 63.1
Sp2g28940 Schrenkiella parvula HOM05D006600 ORTHO05D008446 2.1e-117 426.4 323 77.1
EL10As7g23812 Beta vulgaris HOM05D006600 ORTHO05D008446 3.7e-117 425.6 234 81.2
FAN27G3009 Fragaria x ananassa HOM05D006600 ORTHO05D008446 4.0e-116 422.2 322 78.6
BolC3t18247H Brassica oleracea HOM05D006600 ORTHO05D008446 6.9e-116 421.4 323 62.2
Thhalv10005718m.g Eutrema salsugineum HOM05D006600 ORTHO05D008446 6.9e-116 421.4 323 66.6
CAN.G1054.24 Capsicum annuum HOM05D006600 ORTHO05D008446 9.0e-116 421.0 239 77.8
BraA06t26199Z Brassica rapa HOM05D006600 ORTHO05D008446 2.6e-115 419.5 323 61.9
A06p32700 Brassica napus HOM05D006600 ORTHO05D008446 4.5e-115 418.7 323 61.9
C03p59830 Brassica napus HOM05D006600 ORTHO05D008446 4.5e-115 418.7 323 62.2
CARHR279850 Cardamine hirsuta HOM05D006600 ORTHO05D008446 1.7e-114 416.8 329 73.9
ATR0030G048 Amborella trichopoda HOM05D006600 ORTHO05D008446 2.2e-114 416.4 333 74.5
BcaB02g09901 Brassica carinata HOM05D006600 ORTHO05D008446 1.1e-113 414.1 323 61.0
Zm00001eb214310 Zea mays HOM05D006600 ORTHO05D008446 6.7e-111 404.8 324 60.2
SEGI_28402 Sequoiadendron giganteum HOM05D006600 ORTHO05D008446 2.5e-110 402.9 315 76.8
BcaC01g02830 Brassica carinata HOM05D006600 ORTHO05D008446 3.7e-109 399.1 232 77.2
Os03g0761200 Oryza sativa ssp. japonica HOM05D006600 ORTHO05D008446 2.6e-107 392.9 324 58.6
HPP92_018760 Vanilla planifolia HOM05D006600 ORTHO05D008446 7.7e-107 391.3 316 59.5
COL.COLO4_28538 Corchorus olitorius HOM05D006600 ORTHO05D008446 1.6e-104 383.6 335 58.2
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 4.6e-104 382.1 311 72.0
Nn1g04625 Nelumbo nucifera HOM05D006600 ORTHO05D008446 2.2e-101 373.2 328 71.6
SMO228G0045 Selaginella moellendorffii HOM05D006600 ORTHO05D008446 4.8e-101 372.1 325 55.4
Mapoly0063s0069 Marchantia polymorpha HOM05D006600 ORTHO05D008446 3.9e-95 352.4 235 67.7
AagrBONN_evm.TU.Sc2ySwM_228.1907 Anthoceros agrestis HOM05D006600 ORTHO05D008446 3.3e-94 349.4 237 66.7
Duzib093G2027 Durio zibethinus HOM05D006600 ORTHO05D008446 4.1e-92 342.4 260 64.2
Potri.014G019000 Populus trichocarpa HOM05D006600 ORTHO05D008446 1.0e-90 337.8 263 79.5
ECA246G2737 Erigeron canadensis HOM05D006600 ORTHO05D008446 5.5e-89 332.0 279 74.9
Hma1.2p1_0923F.1_g236980 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 2.1e-88 330.1 281 76.5
COL.COLO4_28541 Corchorus olitorius HOM05D006600 ORTHO05D008446 5.9e-83 312.0 246 63.0
Sc26g0004110 Simmondsia chinensis HOM05D006600 ORTHO05D008446 1.7e-77 293.9 249 77.1
AL8G43570 Arabidopsis lyrata HOM05D006600 ORTHO05D008446 2.0e-75 287.0 251 73.7
Cre01.g050050 Chlamydomonas reinhardtii HOM05D006600 ORTHO05D008446 5.2e-71 272.3 374 39.0
Pp3c17_19880 Physcomitrium patens HOM05D006600 ORTHO05D008446 2.9e-66 256.5 251 66.5
BcaC01g02829 Brassica carinata HOM05D006600 ORTHO05D008446 1.4e-63 247.7 228 54.8
MCO09G534 Micromonas commoda HOM05D006600 ORTHO05D008446 7.0e-60 235.3 327 45.3
MD15G1072900 Malus domestica HOM05D006600 ORTHO05D008446 9.2e-60 235.0 191 60.7
CBR_g40512 Chara braunii HOM05D000409 ORTHO05D000184 1.6e-56 224.2 189 56.1
TAR624G0301 Trochodendron aralioides HOM05D006600 ORTHO05D008446 2.8e-56 223.4 138 73.2
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 3.0e-50 203.4 124 70.2
TAR374G0485 Trochodendron aralioides HOM05D000474 ORTHO05D003648 1.2e-48 198.0 126 69.8
Actinidia08258 Actinidia chinensis HOM05D006600 ORTHO05D008446 2.3e-39 167.2 94 76.6
MBI16_g35586_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D001493 5.6e-17 92.8 59 69.5
Oeu040380.1 Olea europaea HOM05D006600 ORTHO05D008446 5.6e-17 92.8 87 57.5
MELO3C023799.2 Cucumis melo HOM05D006600 ORTHO05D168989 2.1e-11 74.3 43 88.4
Dinv39240 Davidia involucrata HOM05D006600 ORTHO05D008446 1.9e-09 67.8 104 40.4
CBR_g40511 Chara braunii HOM05D000019 ORTHO05D000002 6.9e-07 59.3 67 49.3


User provided reference genes

Program Settings