Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 2.9e-196 688.3 342 100.0
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 1.0e-180 636.7 342 92.7
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 9.5e-171 603.6 341 88.6
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 8.3e-159 563.9 340 82.6
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 2.5e-123 446.0 345 65.5
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 7.3e-123 444.5 345 64.9
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 9.0e-121 437.6 344 64.2
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 2.6e-120 436.0 343 63.8
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 2.9e-119 432.6 339 62.2
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 3.8e-119 432.2 344 62.5
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 2.4e-118 429.5 345 62.6
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 3.2e-118 429.1 344 62.2
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 3.2e-118 429.1 347 62.5
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 9.3e-118 427.6 343 62.1
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 9.3e-118 427.6 345 62.9
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 2.1e-117 426.4 343 62.4
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 4.6e-117 425.2 343 62.4
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 2.3e-116 422.9 343 62.7
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 1.1e-115 420.6 345 62.6
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 9.6e-115 417.5 348 61.2
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 6.2e-114 414.8 342 60.8
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.4e-113 413.7 346 60.1
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.5e-112 410.2 342 59.9
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 9.9e-112 407.5 346 59.8
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 1.7e-111 406.8 340 62.1
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 2.2e-111 406.4 347 62.5
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 2.9e-111 406.0 344 61.6
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 1.1e-110 404.1 354 58.2
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 4.2e-110 402.1 340 59.4
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 5.5e-110 401.7 358 58.1
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 1.6e-109 400.2 342 58.8
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 3.9e-108 395.6 346 59.8
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 2.8e-106 389.4 342 59.9
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 4.0e-105 385.6 342 58.8
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 1.3e-103 380.6 340 60.6
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 6.5e-103 378.3 346 56.1
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 8.4e-103 377.9 349 54.2
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 1.1e-102 377.5 344 57.3
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 2.1e-101 373.2 342 56.4
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 3.5e-101 372.5 342 58.8
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 3.5e-101 372.5 277 63.9
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 1.0e-100 370.9 348 55.2
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 1.1e-99 367.5 277 65.7
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 5.7e-99 365.2 343 56.3
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 4.8e-98 362.1 340 55.0
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 9.0e-97 357.8 342 55.6
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 9.0e-97 357.8 344 57.3
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 1.3e-95 354.0 338 53.0
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 1.3e-95 354.0 348 54.9
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 1.7e-95 353.6 342 53.5
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 2.2e-95 353.2 345 52.2
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 2.2e-95 353.2 342 56.7
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 2.9e-95 352.8 340 55.0
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 5.5e-94 348.6 338 52.4
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 7.2e-94 348.2 338 52.4
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 1.6e-93 347.1 337 54.3
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 2.1e-93 346.7 339 52.5
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 2.1e-93 346.7 340 56.5
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 2.7e-93 346.3 340 54.1
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 1.4e-92 344.0 340 56.5
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 1.8e-92 343.6 381 50.7
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 3.0e-92 342.8 428 44.9
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 4.3e-91 339.0 341 53.7
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 7.4e-91 338.2 336 54.5
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 2.2e-90 336.7 343 53.1
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 1.8e-89 333.6 338 53.8
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 1.8e-89 333.6 353 53.8
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 1.2e-88 330.9 340 52.6
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 2.6e-88 329.7 355 53.2
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 5.9e-88 328.6 342 53.8
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 1.3e-87 327.4 272 58.8
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 3.8e-87 325.9 351 51.0
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 1.4e-86 323.9 342 52.9
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 3.2e-86 322.8 351 51.6
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 5.5e-86 322.0 345 49.9
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 3.6e-85 319.3 353 50.1
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 6.1e-85 318.5 331 51.7
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 1.0e-84 317.8 341 51.3
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 1.4e-84 317.4 319 54.2
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 8.8e-84 314.7 345 52.5
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 4.4e-83 312.4 348 50.3
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 9.1e-81 304.7 355 49.9
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 4.2e-78 295.8 339 48.7
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 7.2e-78 295.0 281 54.4
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 9.4e-78 294.7 337 49.6
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 2.0e-75 287.0 303 51.5
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 1.3e-74 284.3 341 48.1
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 1.6e-72 277.3 338 44.4
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 5.9e-72 275.4 212 67.5
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 2.9e-63 246.5 216 59.7
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 2.8e-53 213.4 242 50.0
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 7.8e-48 195.3 296 42.6
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 7.3e-46 188.7 310 35.8
AUR62022479 Chenopodium quinoa HOM05D006958 ORTHO05D008814 1.6e-45 187.6 175 53.7
Oeu049903.1 Olea europaea HOM05D006958 ORTHO05D008814 7.5e-43 178.7 172 52.3
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 6.6e-39 165.6 187 50.3
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 5.1e-31 139.4 254 35.0
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 1.5e-30 137.9 264 35.2
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 1.8e-28 131.0 198 43.4
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 2.3e-28 130.6 338 29.9
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 4.4e-27 126.3 177 43.5
Os07g0586000 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 7.5e-27 125.6 168 41.7
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 2.2e-26 124.0 91 65.9
SEGI_02529 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 6.4e-26 122.5 164 39.0
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 1.6e-24 117.9 130 50.8
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 1.5e-19 101.3 110 50.0
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 9.9e-19 98.6 129 50.4
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 3.8e-18 96.7 209 34.9
Psat7g107960 Pisum sativum HOM05D006958 ORTHO05D008814 9.2e-17 92.0 105 47.6
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 2.8e-13 80.5 71 47.9
Glyma.07G264001 Glycine max HOM05D006958 ORTHO05D008814 8.4e-10 68.9 85 47.1


User provided reference genes

Program Settings