Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 4.6e-277 957.2 466 100.0
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 9.3e-270 932.9 466 97.0
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 4.3e-259 897.5 466 93.1
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 1.1e-233 813.1 465 82.8
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 1.4e-188 663.3 469 68.9
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 1.2e-187 660.2 462 68.0
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 4.1e-185 651.7 468 68.4
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 6.0e-184 647.9 470 68.5
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 6.2e-181 637.9 468 65.2
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 2.2e-178 629.4 468 66.7
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 2.4e-177 625.9 465 64.5
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 3.2e-177 625.5 454 66.7
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 5.4e-177 624.8 454 65.0
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 2.7e-176 622.5 470 63.4
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 5.1e-175 618.2 470 63.2
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.2e-173 613.6 454 63.7
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.8e-173 612.5 469 62.0
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 8.3e-170 600.9 465 61.7
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 7.3e-166 587.8 475 61.5
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 9.6e-166 587.4 472 60.6
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 4.7e-165 585.1 477 59.7
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 1.8e-164 583.2 466 60.5
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.2e-163 580.5 471 60.9
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 5.8e-163 578.2 457 60.2
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 1.3e-162 577.0 466 62.2
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 1.9e-161 573.2 481 59.3
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 7.1e-161 571.2 457 59.7
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 7.8e-160 567.8 453 59.2
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 5.1e-159 565.1 463 59.4
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 8.7e-159 564.3 456 58.6
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 4.0e-156 555.4 460 60.0
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 6.9e-156 554.7 469 58.4
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 5.8e-155 551.6 469 59.1
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 2.9e-154 549.3 472 59.3
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 3.8e-154 548.9 472 57.0
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 8.4e-154 547.7 462 58.0
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 1.9e-153 546.6 457 55.6
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 5.4e-153 545.0 454 58.6
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 2.7e-152 542.7 457 54.9
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 6.0e-152 541.6 462 57.4
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 1.0e-151 540.8 457 58.6
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 3.0e-151 539.3 454 57.9
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 3.0e-151 539.3 456 59.0
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 3.9e-151 538.9 456 58.8
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 6.6e-151 538.1 468 55.6
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 8.7e-151 537.7 468 58.8
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.5e-150 537.0 469 56.5
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 1.9e-150 536.6 455 58.0
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.3e-150 535.8 454 57.3
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 5.6e-150 535.0 484 55.8
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 9.6e-150 534.3 456 58.1
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 1.6e-149 533.5 453 55.8
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 2.8e-149 532.7 472 57.4
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 4.8e-149 531.9 486 56.8
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 2.4e-148 529.6 455 57.4
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 2.4e-148 529.6 454 57.3
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 2.4e-148 529.6 466 58.2
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 3.8e-146 522.3 450 56.7
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 1.1e-145 520.8 467 54.6
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 2.7e-144 516.2 468 55.1
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 2.7e-144 516.2 463 56.6
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 1.0e-143 514.2 474 54.4
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 1.0e-143 514.2 450 56.9
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 1.1e-142 510.8 471 55.2
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 2.4e-140 503.1 467 53.3
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 3.1e-140 502.7 458 56.1
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 3.4e-139 499.2 428 58.9
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 1.1e-137 494.2 459 54.7
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 1.2e-136 490.7 476 54.6
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 1.0e-135 487.6 461 53.1
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 3.3e-134 482.6 476 52.9
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 3.4e-131 472.6 467 53.5
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 8.7e-127 458.0 451 50.1
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 8.7e-127 458.0 444 52.7
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 1.9e-126 456.8 452 51.1
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 8.2e-125 451.4 477 50.1
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 2.4e-124 449.9 451 50.3
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 1.1e-118 431.0 461 49.5
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 9.7e-118 427.9 317 68.1
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 1.3e-117 427.6 452 49.3
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 2.8e-117 426.4 449 50.1
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 2.8e-117 426.4 452 50.0
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 6.9e-116 421.8 494 49.0
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 2.0e-115 420.2 416 51.7
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 1.9e-113 413.7 454 46.0
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 1.6e-112 410.6 453 49.2
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 2.7e-112 409.8 320 62.5
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 5.1e-111 405.6 451 47.7
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 1.7e-109 400.6 454 46.9
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 1.7e-109 400.6 454 46.9
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 4.1e-108 396.0 453 47.9
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 6.5e-106 388.7 454 46.0
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 1.9e-105 387.1 453 45.9
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 4.7e-104 382.5 454 45.4
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 6.7e-103 378.6 450 45.6
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 4.4e-102 375.9 452 42.9
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 3.5e-99 366.3 467 42.6
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 8.8e-95 351.7 365 49.6
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 2.8e-93 346.7 453 43.3
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 4.3e-81 306.2 278 56.1
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.0e-79 301.6 289 52.6
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 3.7e-77 293.1 324 50.6
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 3.2e-76 290.0 246 57.7
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 2.7e-75 287.0 499 34.9
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 1.1e-63 248.4 326 42.6
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 5.8e-62 242.7 457 34.8
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 1.2e-59 235.0 525 31.8
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 2.2e-53 214.2 242 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 3.8e-45 186.8 361 34.1
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 3.6e-40 170.2 150 52.7
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 1.4e-39 168.3 556 26.4
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 3.0e-34 150.6 191 45.0
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.4e-31 141.7 99 61.6
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 2.4e-31 141.0 99 65.7
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 1.4e-28 131.7 122 54.1
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 1.2e-27 128.6 132 48.5
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 6.7e-26 122.9 166 37.3
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 1.1e-25 122.1 90 71.1
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 2.8e-24 117.5 76 76.3
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 5.3e-23 113.2 105 47.6
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 6.9e-23 112.8 93 59.1
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 3.4e-22 110.5 248 32.3
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 3.2e-20 104.0 91 52.7
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.3e-18 98.6 65 66.2
Oeu037483.1 Olea europaea HOM05D006323 ORTHO05D007827 9.7e-09 65.9 137 36.5
DCAR_019993 Daucus carota HOM05D003519 ORTHO05D004443 1.8e-07 61.6 135 28.9
HPP92_006886 Vanilla planifolia HOM05D003519 ORTHO05D004443 6.9e-07 59.7 141 31.2
Nn1g08957 Nelumbo nucifera HOM05D003519 ORTHO05D004443 7.7e-06 56.2 135 28.9


User provided reference genes

Program Settings