Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010796.2 Cucumis melo HOM05D002412 ORTHO05D002516 2.8e-94 348.6 174 100.0
CsaV3_2G026020 Cucumis sativus L. HOM05D002412 ORTHO05D002516 2.5e-79 298.9 164 93.9
ClCG08G016590 Citrullus lanatus HOM05D002412 ORTHO05D002516 1.2e-68 263.5 164 84.1
Sed0010950 Sechium edule HOM05D002412 ORTHO05D002516 9.4e-42 174.1 167 66.5
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 1.8e-16 90.1 166 40.4
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 8.9e-16 87.8 165 38.8
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 5.8e-15 85.1 176 40.9
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 5.8e-15 85.1 172 39.5
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 9.8e-15 84.3 164 40.9
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 1.7e-14 83.6 168 36.3
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 2.2e-14 83.2 171 36.3
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 2.2e-14 83.2 163 39.3
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 2.2e-14 83.2 186 38.7
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 2.9e-14 82.8 166 37.3
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 4.9e-14 82.0 154 41.6
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 1.8e-13 80.1 177 36.7
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 1.2e-12 77.4 177 36.2
Haze_22419 Corylus avellana HOM05D002412 ORTHO05D002516 1.6e-12 77.0 110 46.4
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 2.7e-12 76.3 125 41.6
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 7.8e-12 74.7 161 36.6
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 7.8e-12 74.7 151 37.7
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 1.0e-11 74.3 165 37.0
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 1.3e-11 73.9 159 41.5
ClCG05G020680 Citrullus lanatus HOM05D002412 ORTHO05D002516 1.7e-11 73.6 169 35.5
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 1.7e-11 73.6 118 39.0
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 2.3e-11 73.2 190 35.3
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 2.3e-11 73.2 146 35.6
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 2.3e-11 73.2 167 37.1
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 3.0e-11 72.8 144 40.3
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 3.0e-11 72.8 165 37.0
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.9e-11 72.4 161 36.0
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 3.9e-11 72.4 158 38.0
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 5.0e-11 72.0 154 37.7
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 6.6e-11 71.6 144 36.1
Atru.chr13.848 Acer truncatum HOM05D002412 ORTHO05D002516 8.6e-11 71.2 141 38.3
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 8.6e-11 71.2 119 44.5
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 8.6e-11 71.2 151 37.7
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 8.6e-11 71.2 171 38.0
RhsimUnG0041400 Rhododendron simsii HOM05D002412 ORTHO05D002516 8.6e-11 71.2 149 36.2
RhsimUnG0123400 Rhododendron simsii HOM05D002412 ORTHO05D002516 8.6e-11 71.2 149 36.2
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 1.1e-10 70.9 142 41.5
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 1.5e-10 70.5 149 34.9
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 1.5e-10 70.5 164 36.6
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.5e-10 70.5 172 38.4
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 1.9e-10 70.1 167 36.5
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.9e-10 70.1 159 38.4
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 2.5e-10 69.7 162 35.8
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 2.5e-10 69.7 162 38.9
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 4.3e-10 68.9 148 39.9
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.3e-10 68.9 159 39.0
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 4.3e-10 68.9 180 34.4
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 5.6e-10 68.6 180 31.7
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 7.3e-10 68.2 159 39.0
vmacro01953 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 7.3e-10 68.2 173 31.2
Glyma.04G046600 Glycine max HOM05D002412 ORTHO05D002516 9.5e-10 67.8 172 39.0
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 9.5e-10 67.8 169 39.1
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 1.2e-09 67.4 163 35.0
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 1.2e-09 67.4 166 36.7
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 1.2e-09 67.4 170 38.2
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 1.6e-09 67.0 153 37.3
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 1.6e-09 67.0 151 34.4
A03p62330 Brassica napus HOM05D002412 ORTHO05D002516 2.1e-09 66.6 152 37.5
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 2.1e-09 66.6 152 37.5
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 2.1e-09 66.6 163 31.9
Cc10_g05040 Coffea canephora HOM05D002412 ORTHO05D002516 2.1e-09 66.6 128 38.3
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 2.1e-09 66.6 177 36.2
TPR.G33675 Trifolium pratense HOM05D002412 ORTHO05D002516 2.1e-09 66.6 163 38.0
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 3.6e-09 65.9 150 40.0
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 3.6e-09 65.9 173 35.3
BolC7t46433H Brassica oleracea HOM05D002412 ORTHO05D002516 4.7e-09 65.5 169 35.5
Sed0002993 Sechium edule HOM05D002412 ORTHO05D002516 4.7e-09 65.5 165 34.5
Solyc01g106910.4 Solanum lycopersicum HOM05D002412 ORTHO05D002516 4.7e-09 65.5 165 34.5
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 6.2e-09 65.1 119 38.7
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 8.0e-09 64.7 162 36.4
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 8.0e-09 64.7 150 34.0
PGSC0003DMG401011556 Solanum tuberosum HOM05D002412 ORTHO05D002516 8.0e-09 64.7 144 36.8
Actinidia00360 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.1e-08 64.3 179 34.1
AUR62041661 Chenopodium quinoa HOM05D002412 ORTHO05D002516 1.1e-08 64.3 156 34.0
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 1.1e-08 64.3 178 31.5
Eucgr.I01046 Eucalyptus grandis HOM05D002412 ORTHO05D002516 1.4e-08 63.9 188 32.4
FAN15G1065 Fragaria x ananassa HOM05D002412 ORTHO05D002516 1.4e-08 63.9 118 41.5
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 1.4e-08 63.9 160 34.4
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.4e-08 63.9 175 36.0
C07p59890 Brassica napus HOM05D002412 ORTHO05D002516 2.3e-08 63.2 167 34.1
DCAR_012823 Daucus carota HOM05D002412 ORTHO05D002516 2.3e-08 63.2 114 38.6
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 2.3e-08 63.2 160 36.2
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 2.3e-08 63.2 149 35.6
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 2.3e-08 63.2 149 35.6
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 3.1e-08 62.8 177 35.6
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 3.1e-08 62.8 163 31.9
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 4.0e-08 62.4 174 35.1
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.0e-08 62.4 149 35.6
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 4.0e-08 62.4 155 35.5
Sed0010289 Sechium edule HOM05D002412 ORTHO05D002516 4.0e-08 62.4 181 34.3
HPP92_020402 Vanilla planifolia HOM05D002412 ORTHO05D002516 4.0e-08 62.4 136 36.8
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 5.2e-08 62.0 155 34.8
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 5.2e-08 62.0 122 36.1
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 6.8e-08 61.6 149 34.9
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 6.8e-08 61.6 181 35.4
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 6.8e-08 61.6 153 32.7
Eucgr.F00090 Eucalyptus grandis HOM05D002412 ORTHO05D002516 8.9e-08 61.2 172 35.5
Lalb_Chr06g0165021 Lupinus albus HOM05D002412 ORTHO05D002516 8.9e-08 61.2 122 40.2
PSO170G3219 Papaver somniferum HOM05D002412 ORTHO05D002516 8.9e-08 61.2 180 36.1
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 8.9e-08 61.2 164 31.1
unitig_578.g16152 Utricularia gibba HOM05D002412 ORTHO05D002516 8.9e-08 61.2 109 35.8
MSTRG.22217 Avicennia marina HOM05D002412 ORTHO05D002516 1.2e-07 60.8 171 33.3
A01p04520 Brassica napus HOM05D002412 ORTHO05D002516 1.2e-07 60.8 163 32.5
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 1.2e-07 60.8 160 34.4
Psat0ss7070g0040 Pisum sativum HOM05D002412 ORTHO05D002516 1.2e-07 60.8 180 35.6
Solyc12g088300.2 Solanum lycopersicum HOM05D002412 ORTHO05D002516 1.2e-07 60.8 144 35.4
BolC1t00474H Brassica oleracea HOM05D002412 ORTHO05D002516 1.5e-07 60.5 152 34.9
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 1.5e-07 60.5 179 33.0
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.0e-07 60.1 166 34.3
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 2.0e-07 60.1 151 35.8
C01p04900 Brassica napus HOM05D002412 ORTHO05D002516 2.0e-07 60.1 163 32.5
BraA01t00437Z Brassica rapa HOM05D002412 ORTHO05D002516 2.0e-07 60.1 163 32.5
Medtr1g106080 Medicago truncatula HOM05D002412 ORTHO05D002516 2.6e-07 59.7 155 35.5
Nitab4.5_0000497g0080 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.6e-07 59.7 143 32.9
Rhsim05G0091500 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.6e-07 59.7 161 35.4
Sp7g31540 Schrenkiella parvula HOM05D002412 ORTHO05D002516 2.6e-07 59.7 157 35.0
Sopen12g030300 Solanum pennellii HOM05D002412 ORTHO05D002516 2.6e-07 59.7 142 34.5
Psat6g017720 Pisum sativum HOM05D002412 ORTHO05D002516 3.4e-07 59.3 148 35.1
Psat6g214680 Pisum sativum HOM05D002412 ORTHO05D002516 3.4e-07 59.3 164 35.4
BcaC09g52190 Brassica carinata HOM05D002412 ORTHO05D002516 4.4e-07 58.9 155 33.5
BcaNung04670 Brassica carinata HOM05D002412 ORTHO05D002516 4.4e-07 58.9 154 35.7
ECA246G2811 Erigeron canadensis HOM05D002412 ORTHO05D002516 4.4e-07 58.9 115 35.7
Nitab4.5_0007781g0010 Nicotiana tabacum HOM05D002412 ORTHO05D002516 4.4e-07 58.9 172 32.6
unitig_0.g1046 Utricularia gibba HOM05D002412 ORTHO05D002516 4.4e-07 58.9 130 36.2
DCAR_019349 Daucus carota HOM05D001207 ORTHO05D009015 5.8e-07 58.5 124 39.5
Gorai.010G026300 Gossypium raimondii HOM05D002412 ORTHO05D002516 5.8e-07 58.5 116 34.5
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 5.8e-07 58.5 164 36.0
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 5.8e-07 58.5 150 32.0
Gohir.A06G024600 Gossypium hirsutum HOM05D002412 ORTHO05D002516 7.5e-07 58.2 116 33.6
Nitab4.5_0001458g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 7.5e-07 58.2 171 35.7
SalBow6G4199 Salvia bowleyana HOM05D002412 ORTHO05D002516 7.5e-07 58.2 154 33.8
Gohir.D06G021700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 9.8e-07 57.8 116 34.5
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 9.8e-07 57.8 161 32.9
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 1.3e-06 57.4 181 34.8
Lsat_1_v5_gn_6_108580 Lactuca sativa HOM05D002412 ORTHO05D002516 1.3e-06 57.4 99 41.4
CARHR241890 Cardamine hirsuta HOM05D002412 ORTHO05D002516 1.7e-06 57.0 161 33.5
Cpa.g.sc142.41 Carica papaya HOM05D002412 ORTHO05D002516 1.7e-06 57.0 130 36.2
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 1.7e-06 57.0 159 33.3
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.7e-06 57.0 158 32.9
VMungo0720G0862 Vigna mungo HOM05D002412 ORTHO05D002516 1.7e-06 57.0 172 33.7
Ca_13210_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 2.2e-06 56.6 112 41.1
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 2.2e-06 56.6 158 32.9
DCAR_020053 Daucus carota HOM05D002412 ORTHO05D002516 2.2e-06 56.6 152 33.6
QL11p029982 Quercus lobata HOM05D002412 ORTHO05D002516 2.2e-06 56.6 188 31.9
THA.LOC104824967 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 2.2e-06 56.6 180 36.7
Cc00_g17020 Coffea canephora HOM05D002412 ORTHO05D002516 2.9e-06 56.2 125 37.6
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 2.9e-06 56.2 164 34.8
Oeu037507.3 Olea europaea HOM05D006761 ORTHO05D002516 2.9e-06 56.2 139 35.3
AL7G17660 Arabidopsis lyrata HOM05D002412 ORTHO05D002516 3.7e-06 55.8 158 29.7
AT4G33800 Arabidopsis thaliana HOM05D002412 ORTHO05D002516 3.7e-06 55.8 156 30.8
Nitab4.5_0002040g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 3.7e-06 55.8 172 32.6
Oeu053627.1 Olea europaea HOM05D002412 ORTHO05D002516 3.7e-06 55.8 115 34.8
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 4.9e-06 55.5 134 34.3
Glyma.10G256100 Glycine max HOM05D002412 ORTHO05D002516 6.4e-06 55.1 171 33.3
Nitab4.5_0003953g0040 Nicotiana tabacum HOM05D002412 ORTHO05D002516 6.4e-06 55.1 153 31.4
GSVIVG01009322001 Vitis vinifera HOM05D002412 ORTHO05D002516 8.3e-06 54.7 111 36.9


User provided reference genes

Program Settings