Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 1.1e-101 373.2 177 100.0
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 2.3e-72 275.8 137 92.0
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 2.0e-68 262.7 137 87.6
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 1.1e-66 256.9 137 84.7
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.3e-62 243.4 134 79.9
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 1.9e-61 239.6 137 75.9
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 4.1e-61 238.4 133 78.9
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 5.4e-61 238.0 137 75.2
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 9.2e-61 237.3 134 77.6
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 9.2e-61 237.3 134 76.1
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.2e-60 236.9 134 76.9
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 1.2e-60 236.9 137 75.2
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 1.6e-60 236.5 134 78.4
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 2.7e-60 235.7 137 74.5
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.6e-60 235.0 137 75.9
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.6e-60 235.0 137 75.9
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 4.6e-60 235.0 137 75.9
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 4.6e-60 235.0 134 76.9
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 6.0e-60 234.6 134 76.9
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 6.0e-60 234.6 134 76.1
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 6.0e-60 234.6 134 78.4
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 1.0e-59 233.8 137 77.4
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 1.7e-59 233.0 136 75.0
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 2.3e-59 232.6 148 70.9
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 3.0e-59 232.3 137 73.0
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.0e-59 232.3 137 76.6
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 3.9e-59 231.9 144 71.5
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 6.6e-59 231.1 137 74.5
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.5e-58 229.9 137 71.5
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 1.9e-58 229.6 137 70.8
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 3.3e-58 228.8 137 73.7
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 3.3e-58 228.8 137 72.3
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 3.3e-58 228.8 137 72.3
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 5.6e-58 228.0 134 75.4
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 2.3e-56 222.6 137 71.5
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 3.1e-56 222.2 137 73.0
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 5.2e-56 221.5 137 70.8
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 8.9e-56 220.7 134 70.9
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 2.6e-55 219.2 132 68.9
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 5.8e-55 218.0 134 70.1
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 2.2e-54 216.1 134 72.4
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 3.7e-54 215.3 137 69.3
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 3.7e-54 215.3 137 69.3
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 4.9e-54 214.9 134 70.9
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.1e-53 213.8 137 67.9
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 1.4e-53 213.4 137 69.3
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 1.9e-53 213.0 135 68.9
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 2.4e-53 212.6 137 67.2
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 3.2e-53 212.2 137 67.9
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.1e-53 211.8 137 67.2
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 5.4e-53 211.5 137 67.2
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 7.1e-53 211.1 137 67.2
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 9.2e-53 210.7 137 66.4
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 1.2e-52 210.3 136 66.2
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 1.2e-52 210.3 136 65.4
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.7e-52 209.1 167 59.9
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 7.8e-52 207.6 144 66.7
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.7e-51 206.5 136 63.2
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 1.7e-51 206.5 135 67.4
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 3.0e-51 205.7 136 63.2
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 3.0e-51 205.7 137 65.0
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 3.9e-51 205.3 138 67.4
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 3.9e-51 205.3 137 66.4
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 5.1e-51 204.9 137 67.2
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 6.6e-51 204.5 167 59.9
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 8.6e-51 204.1 164 57.3
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 1.9e-50 203.0 138 66.7
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 1.9e-50 203.0 138 66.7
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 2.5e-50 202.6 138 64.5
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 2.5e-50 202.6 138 66.7
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 3.3e-50 202.2 138 67.4
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 3.3e-50 202.2 134 64.9
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 5.6e-50 201.4 138 65.9
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 5.6e-50 201.4 138 66.7
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 5.6e-50 201.4 138 66.7
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 5.6e-50 201.4 137 64.2
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 7.3e-50 201.1 138 66.7
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 1.2e-49 200.3 138 65.9
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.2e-49 200.3 134 61.9
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.2e-49 200.3 137 64.2
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 1.2e-49 200.3 137 64.2
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 1.6e-49 199.9 186 52.2
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 2.8e-49 199.1 159 58.5
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 3.6e-49 198.7 138 65.2
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 4.7e-49 198.4 138 64.5
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 4.7e-49 198.4 135 66.7
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 6.2e-49 198.0 137 63.5
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 1.4e-48 196.8 138 64.5
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 1.4e-48 196.8 137 64.2
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.4e-48 196.1 138 63.0
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.2e-48 194.9 177 53.7
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 1.5e-47 193.4 148 62.2
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.6e-47 192.6 138 65.2
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 3.4e-47 192.2 137 61.3
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 4.4e-47 191.8 137 60.6
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 1.7e-46 189.9 132 64.4
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.7e-46 189.9 133 63.2
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.1e-45 187.2 135 60.7
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 4.2e-45 185.3 138 60.9
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 9.3e-45 184.1 173 50.3
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 7.8e-44 181.0 137 60.6
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 1.0e-43 180.6 147 57.1
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.3e-43 179.5 137 59.9
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 5.6e-42 174.9 142 57.7
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 3.6e-41 172.2 136 58.8
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 2.4e-40 169.5 137 52.6
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 4.0e-40 168.7 159 49.7
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 1.2e-39 167.2 131 61.1
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.4e-39 165.6 134 53.7
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.8e-39 164.9 133 54.1
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 3.2e-37 159.1 97 69.1
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 3.2e-37 159.1 97 69.1
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.2e-37 158.7 131 54.2
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 5.4e-37 158.3 103 67.0
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 1.2e-36 157.1 98 70.4
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 1.6e-36 156.8 136 53.7
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.7e-36 156.0 98 69.4
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 2.7e-36 156.0 137 51.1
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 2.3e-35 152.9 137 54.7
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.1e-34 150.6 135 52.6
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 5.6e-34 148.3 97 64.9
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 9.6e-34 147.5 134 52.2
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 9.6e-34 147.5 178 42.7
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 6.2e-33 144.8 136 47.1
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.1e-32 144.1 101 58.4
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 9.0e-32 141.0 138 48.6
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 1.7e-30 136.7 136 47.1
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 3.8e-30 135.6 87 69.0
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 8.4e-30 134.4 98 61.2
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-29 134.0 120 52.5
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 2.4e-29 132.9 97 60.8
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 9.3e-29 131.0 98 59.2
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 3.5e-28 129.0 144 47.2
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 5.1e-27 125.2 87 65.5
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 5.6e-26 121.7 148 46.6
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 9.6e-26 120.9 120 50.0
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.1e-25 119.8 80 63.8
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.1e-24 117.5 128 40.6
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 1.4e-24 117.1 114 50.9
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 1.2e-23 114.0 97 52.6
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.6e-20 103.6 92 50.0
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 2.1e-20 103.2 101 53.5
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.1e-16 89.0 91 50.5
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.9e-16 88.2 65 60.0
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 9.0e-16 87.8 127 36.2
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.0e-15 86.7 82 52.4
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 7.6e-15 84.7 131 38.2
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.9e-14 82.8 57 63.2
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 3.8e-14 82.4 140 37.9
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 5.0e-14 82.0 134 36.6
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.4e-14 81.3 65 56.9
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.9e-13 80.1 65 55.4
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.5e-13 78.6 57 61.4
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 7.9e-12 74.7 61 50.8
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 4.8e-09 65.5 41 65.9
Hma1.2p1_2790F.1_g328600 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 3.1e-08 62.8 71 47.9
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 5.3e-08 62.0 47 53.2
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 1.5e-07 60.5 47 61.7
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 1.0e-06 57.8 44 59.1
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.2e-06 56.6 84 34.5
MCO11G136 Micromonas commoda HOM05D004267 ORTHO05D005267 2.9e-06 56.2 109 31.2
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 3.8e-06 55.8 39 66.7


User provided reference genes

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