Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010736.2 Cucumis melo HOM05D007857 ORTHO05D009355 1.2e-209 733.0 404 100.0
CsaV3_2G025390 Cucumis sativus L. HOM05D007857 ORTHO05D009355 1.6e-137 493.4 369 78.9
ClCG08G017230 Citrullus lanatus HOM05D007857 ORTHO05D009355 5.8e-127 458.4 369 69.9
Sed0017756 Sechium edule HOM05D007857 ORTHO05D009355 7.2e-77 292.0 355 55.8
Sed0006532 Sechium edule HOM05D007857 ORTHO05D009355 3.9e-75 286.2 252 62.3
Dinv10979 Davidia involucrata HOM05D007857 ORTHO05D009355 2.7e-39 167.2 362 34.8
CANSAT01G1499 Cannabis sativa HOM05D007857 ORTHO05D009355 5.6e-37 159.5 292 39.0
Hma1.2p1_1239F.1_g269420 Hydrangea macrophylla HOM05D007857 ORTHO05D009355 2.1e-36 157.5 237 40.9
Dinv14814 Davidia involucrata HOM05D007857 ORTHO05D009355 1.7e-33 147.9 248 39.1
Oeu020304.1 Olea europaea HOM05D001334 ORTHO05D001119 6.4e-33 146.0 268 38.1
Thecc.02G276200 Theobroma cacao HOM05D007857 ORTHO05D009355 8.3e-33 145.6 376 32.7
QL03p054319 Quercus lobata HOM05D007857 ORTHO05D009355 1.9e-32 144.4 244 37.3
COL.COLO4_20347 Corchorus olitorius HOM05D007857 ORTHO05D009355 4.1e-32 143.3 237 38.4
TWI75G0924 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 9.2e-32 142.1 230 38.7
Ciclev10033758m.g Citrus clementina HOM05D007857 ORTHO05D009355 4.6e-31 139.8 359 32.6
CSS0005757 Camellia sinensis var. sinensis HOM05D007857 ORTHO05D009355 1.7e-30 137.9 285 37.9
Ca_18058_v3 Cicer arietinum L. HOM05D007857 ORTHO05D009355 3.0e-30 137.1 221 41.2
Haze_12382 Corylus avellana HOM05D007857 ORTHO05D009355 3.9e-30 136.7 154 47.4
TWI36G0032 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 3.9e-30 136.7 243 36.6
TWI36G1497 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 3.9e-30 136.7 243 36.6
Sc04g0010010 Simmondsia chinensis HOM05D007857 ORTHO05D009355 1.5e-29 134.8 242 35.5
Cfa009341 Carpinus fangiana HOM05D007857 ORTHO05D009355 2.5e-29 134.0 155 46.5
Prupe.1G231500 Prunus persica HOM05D007857 ORTHO05D009355 5.6e-29 132.9 167 43.1
TAR374G0584 Trochodendron aralioides HOM05D007857 ORTHO05D009355 1.6e-28 131.3 353 31.4
Manes.13G017400 Manihot esculenta HOM05D007857 ORTHO05D009355 2.1e-28 131.0 210 38.6
Phvul.002G175100 Phaseolus vulgaris HOM05D007857 ORTHO05D009355 2.8e-28 130.6 239 34.7
CiPaw.06G100500 Carya illinoinensis HOM05D007857 ORTHO05D009355 4.7e-28 129.8 375 29.6
FvH4_4g24090 Fragaria vesca HOM05D007857 ORTHO05D009355 1.1e-27 128.6 249 33.3
Potri.010G057800 Populus trichocarpa HOM05D007857 ORTHO05D009355 1.1e-27 128.6 294 32.0
Atru.chr11.2290 Acer truncatum HOM05D007857 ORTHO05D009355 1.4e-27 128.3 279 40.5
MD16G1115600 Malus domestica HOM05D007857 ORTHO05D009355 2.3e-27 127.5 166 45.2
Glyma.03G186400 Glycine max HOM05D007857 ORTHO05D009355 5.2e-27 126.3 212 38.2
MD13G1115600 Malus domestica HOM05D007857 ORTHO05D009355 6.8e-27 125.9 280 36.1
Sabra10G0047600 Salix brachista HOM05D007857 ORTHO05D009355 1.2e-26 125.2 356 33.1
Lj4g0021592 Lotus japonicus HOM05D007857 ORTHO05D009355 2.0e-26 124.4 269 34.6
RcHm_v2.0_Chr4g0430861 Rosa chinensis HOM05D007857 ORTHO05D009355 2.0e-26 124.4 223 34.5
Solyc04g045390.1 Solanum lycopersicum HOM05D007857 ORTHO05D009355 2.0e-26 124.4 239 36.0
Glyma.19G186500 Glycine max HOM05D007857 ORTHO05D009355 3.4e-26 123.6 213 38.0
FAN07G0728 Fragaria x ananassa HOM05D007857 ORTHO05D009355 4.4e-26 123.2 215 33.5
FAN12G2990 Fragaria x ananassa HOM05D007857 ORTHO05D009355 4.4e-26 123.2 249 32.9
Gorai.005G169600 Gossypium raimondii HOM05D007857 ORTHO05D009355 4.4e-26 123.2 165 42.4
TAR622G0135 Trochodendron aralioides HOM05D007857 ORTHO05D009355 4.4e-26 123.2 295 33.9
Actinidia20693 Actinidia chinensis HOM05D007857 ORTHO05D009355 5.8e-26 122.9 309 32.4
Gohir.A03G127600 Gossypium hirsutum HOM05D007857 ORTHO05D009355 7.5e-26 122.5 166 40.4
Gohir.D02G151200 Gossypium hirsutum HOM05D007857 ORTHO05D009355 7.5e-26 122.5 165 42.4
Glyma.05G146200 Glycine max HOM05D007857 ORTHO05D009355 1.3e-25 121.7 354 30.2
Lalb_Chr07g0187361 Lupinus albus HOM05D007857 ORTHO05D009355 7.1e-24 115.9 351 30.8
Medtr8g080270 Medicago truncatula HOM05D007857 ORTHO05D009355 1.6e-23 114.8 347 36.3
Psat7g078480 Pisum sativum HOM05D007857 ORTHO05D009355 2.1e-23 114.4 249 36.1
Rhsim12G0103100 Rhododendron simsii HOM05D007857 ORTHO05D009355 6.0e-23 112.8 312 30.4
SalBow2G3021 Salvia bowleyana HOM05D007857 ORTHO05D009355 1.7e-22 111.3 176 39.8
Potri.008G177300 Populus trichocarpa HOM05D007857 ORTHO05D009355 6.6e-22 109.4 374 29.1
PSO782G1056 Papaver somniferum HOM05D007857 ORTHO05D009355 2.5e-21 107.5 237 32.1
PSO063G0898 Papaver somniferum HOM05D007857 ORTHO05D009355 3.3e-21 107.1 286 29.7
arahy.Tifrunner.gnm1.ann1.AFM6H1 Arachis hypogaea HOM05D007857 ORTHO05D009355 5.6e-21 106.3 278 34.2
arahy.Tifrunner.gnm1.ann1.32T9N9 Arachis hypogaea HOM05D007857 ORTHO05D009355 1.6e-20 104.8 277 33.9
arahy.Tifrunner.gnm1.ann1.ZB6N55 Arachis hypogaea HOM05D007857 ORTHO05D009355 1.6e-20 104.8 277 33.9
VMungo0251G2942 Vigna mungo HOM05D007857 ORTHO05D009355 2.1e-20 104.4 253 31.2
Aqoxy5G03443 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 3.6e-20 103.6 253 33.2
DCAR_031188 Daucus carota HOM05D007857 ORTHO05D009355 8.1e-20 102.4 215 30.7
TPR.G17074 Trifolium pratense HOM05D007857 ORTHO05D009355 8.1e-20 102.4 355 32.4
Eucgr.H04657 Eucalyptus grandis HOM05D007857 ORTHO05D009355 2.4e-19 100.9 335 30.1
Migut.K00709 Erythranthe guttata HOM05D007857 ORTHO05D009355 4.0e-19 100.1 174 36.8
Nn4g22377 Nelumbo nucifera HOM05D007857 ORTHO05D009355 5.8e-18 96.3 169 34.9
PSO357G0688 Papaver somniferum HOM05D007857 ORTHO05D009355 1.7e-17 94.7 268 29.5
AL2G26210 Arabidopsis lyrata HOM05D010720 ORTHO05D009355 6.4e-17 92.8 174 38.5
SGA_v2.0_scaffold9G04766 Striga asiatica HOM05D007857 ORTHO05D009355 1.9e-16 91.3 226 31.0
CARHR060110 Cardamine hirsuta HOM05D010720 ORTHO05D009355 4.2e-16 90.1 218 32.6
Aqoxy3G01489 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 1.2e-15 88.6 113 39.8
Cpa.g.sc43.26 Carica papaya HOM05D007857 ORTHO05D009355 2.1e-15 87.8 338 28.4
AT1G67540 Arabidopsis thaliana HOM05D010720 ORTHO05D009355 3.5e-15 87.0 219 32.4
Sabra08G0135300 Salix brachista HOM05D007857 ORTHO05D009355 4.6e-15 86.7 221 29.9
Nitab4.5_0004967g0040 Nicotiana tabacum HOM05D007857 ORTHO05D009355 1.3e-14 85.1 97 43.3
MBI11_g31349_MAGBIO Magnolia biondii HOM05D007857 ORTHO05D009355 3.0e-14 84.0 292 28.1
BraA07t31035Z Brassica rapa HOM05D010720 ORTHO05D009355 1.5e-13 81.6 165 33.3
Thhalv10019017m.g Eutrema salsugineum HOM05D010720 ORTHO05D009355 1.9e-13 81.3 229 30.1
PGSC0003DMG400017971 Solanum tuberosum HOM05D007857 ORTHO05D009355 1.9e-13 81.3 196 32.7
A07p34090 Brassica napus HOM05D010720 ORTHO05D009355 2.5e-13 80.9 165 33.3
Sopen04g010360 Solanum pennellii HOM05D007857 ORTHO05D009355 3.3e-13 80.5 112 39.3
THA.LOC104807888 Tarenaya hassleriana HOM05D010720 ORTHO05D009355 3.3e-13 80.5 174 32.2
BcaB03g15187 Brassica carinata HOM05D010720 ORTHO05D009355 7.3e-13 79.3 165 32.7
C06p42700 Brassica napus HOM05D010720 ORTHO05D009355 7.3e-13 79.3 165 33.3
BolC6t39169H Brassica oleracea HOM05D010720 ORTHO05D009355 7.3e-13 79.3 165 33.3
PGR119G0189 Punica granatum HOM05D007857 ORTHO05D009355 1.8e-11 74.7 279 29.4
Carub.0002s1388 Capsella rubella HOM05D010720 ORTHO05D009355 9.9e-10 68.9 180 32.2
Nitab4.5_0000146g0080 Nicotiana tabacum HOM05D007857 ORTHO05D009355 8.4e-09 65.9 82 41.5
SHI17949 Sapria himalayana HOM05D007857 ORTHO05D009355 2.4e-08 64.3 333 27.0
Sp5g22550 Schrenkiella parvula HOM05D010720 ORTHO05D009355 5.4e-08 63.2 181 32.0
Cc11_g16750 Coffea canephora HOM05D007857 ORTHO05D009355 1.7e-06 58.2 291 25.8


User provided reference genes

Program Settings