Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 2.9e-70 268.5 136 100.0
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 7.6e-63 243.8 130 93.8
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 7.8e-60 233.8 130 90.0
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 1.4e-48 196.4 130 76.9
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 6.4e-38 161.0 130 67.7
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 7.1e-37 157.5 131 66.4
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 1.6e-36 156.4 133 63.2
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 3.5e-36 155.2 133 66.2
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 3.5e-36 155.2 134 61.9
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 1.0e-35 153.7 132 63.6
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 1.0e-35 153.7 131 64.9
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 1.3e-35 153.3 134 61.2
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 2.3e-35 152.5 131 62.6
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 3.9e-35 151.8 131 64.1
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 5.1e-35 151.4 113 69.0
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 8.7e-35 150.6 134 60.4
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 8.7e-35 150.6 131 61.8
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 1.1e-34 150.2 130 62.3
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 1.1e-34 150.2 136 59.6
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 1.1e-34 150.2 129 61.2
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 1.1e-34 150.2 111 67.6
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 1.5e-34 149.8 125 60.8
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 2.5e-34 149.1 139 61.9
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 3.3e-34 148.7 129 60.5
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 4.3e-34 148.3 131 61.1
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 5.6e-34 147.9 131 60.3
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 1.3e-33 146.7 138 60.1
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.3e-33 146.7 136 58.8
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 1.3e-33 146.7 129 59.7
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 1.3e-33 146.7 132 59.8
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 3.7e-33 145.2 138 59.4
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 4.8e-33 144.8 135 56.3
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 8.2e-33 144.1 111 66.7
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 8.2e-33 144.1 118 61.9
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 1.8e-32 142.9 131 56.5
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 1.8e-32 142.9 126 62.7
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 3.1e-32 142.1 96 72.9
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 3.1e-32 142.1 143 58.7
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 3.1e-32 142.1 118 61.0
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 4.0e-32 141.7 138 59.4
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 5.3e-32 141.4 132 59.1
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 6.9e-32 141.0 142 57.7
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 6.9e-32 141.0 136 56.6
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 1.2e-31 140.2 131 56.5
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 1.5e-31 139.8 96 71.9
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 1.5e-31 139.8 129 60.5
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 3.4e-31 138.7 132 57.6
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 1.0e-30 137.1 135 56.3
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 1.3e-30 136.7 81 77.8
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 1.3e-30 136.7 133 54.1
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 2.2e-30 136.0 126 59.5
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 2.9e-30 135.6 130 56.2
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 2.5e-29 132.5 148 54.1
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 4.2e-29 131.7 97 64.9
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 5.5e-29 131.3 116 56.9
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 9.3e-29 130.6 129 51.2
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 2.1e-28 129.4 143 51.0
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 1.0e-27 127.1 99 63.6
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 1.8e-27 126.3 100 63.0
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 1.1e-26 123.6 84 72.6
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 1.5e-26 123.2 137 53.3
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 3.3e-26 122.1 143 52.4
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 3.3e-26 122.1 107 55.1
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 8.2e-25 117.5 163 44.2
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 8.2e-25 117.5 170 43.5
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 1.1e-24 117.1 121 52.9
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 1.4e-24 116.7 116 52.6
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 1.4e-24 116.7 151 44.4
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 2.4e-24 115.9 133 51.1
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 2.4e-24 115.9 81 67.9
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 2.4e-24 115.9 94 59.6
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 3.1e-24 115.5 80 71.2
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 3.1e-24 115.5 131 53.4
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 3.1e-24 115.5 148 48.6
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 5.3e-24 114.8 127 52.8
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 6.9e-24 114.4 104 55.8
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 1.5e-23 113.2 124 50.0
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 2.0e-23 112.8 130 50.8
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 3.4e-23 112.1 114 51.8
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 1.0e-22 110.5 113 53.1
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 1.3e-22 110.2 136 49.3
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 1.1e-21 107.1 137 46.7
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 3.2e-21 105.5 138 47.8
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 4.2e-21 105.1 139 47.5
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 1.6e-20 103.2 138 47.1
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 2.1e-20 102.8 101 54.5
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 3.6e-20 102.1 138 46.4
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 3.6e-20 102.1 97 55.7
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 4.6e-20 101.7 101 58.4
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 6.1e-20 101.3 104 52.9
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 1.1e-18 97.1 84 59.5
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 7.4e-18 94.4 52 84.6
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 9.7e-18 94.0 52 80.8
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 2.8e-17 92.4 101 54.5
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 2.8e-17 92.4 101 54.5
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 7.7e-15 84.3 58 69.0
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 1.3e-14 83.6 85 43.5
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 8.5e-14 80.9 79 50.6
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 1.4e-13 80.1 57 70.2
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 3.2e-13 79.0 57 68.4
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 5.5e-13 78.2 89 47.2
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 7.2e-13 77.8 84 40.5
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 4.7e-12 75.1 51 72.5
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 6.1e-12 74.7 52 71.2
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 3.7e-09 65.5 85 34.1
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 6.3e-09 64.7 79 44.3
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 8.2e-09 64.3 91 46.2
MCO03G004 Micromonas commoda HOM05D006725 ORTHO05D008223 3.1e-08 62.4 96 34.4
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 1.0e-06 57.4 31 83.9
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 1.3e-06 57.0 42 64.3
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 1.3e-06 57.0 42 64.3
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 2.9e-06 55.8 31 83.9
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 2.9e-06 55.8 30 83.3


User provided reference genes

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