Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 2.2e-124 449.1 250 100.0
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 1.5e-88 330.1 254 78.7
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 4.0e-78 295.4 259 65.3
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 7.7e-45 184.9 257 47.1
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 1.7e-23 114.0 196 39.3
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 4.1e-22 109.4 196 37.8
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 1.2e-21 107.8 198 35.9
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.2e-21 107.8 197 39.6
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 2.0e-21 107.1 197 34.5
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.7e-21 105.1 197 39.6
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 1.3e-20 104.4 244 34.4
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 2.2e-20 103.6 205 35.6
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 5.0e-20 102.4 197 37.6
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 5.0e-20 102.4 197 37.6
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 5.0e-20 102.4 197 37.1
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 8.5e-20 101.7 261 29.5
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 1.9e-19 100.5 196 34.2
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 1.9e-19 100.5 197 34.5
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 1.9e-19 100.5 256 31.2
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.9e-19 100.5 250 32.8
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.9e-19 100.5 203 35.0
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 2.5e-19 100.1 204 35.3
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 2.5e-19 100.1 201 32.3
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 7.2e-19 98.6 204 31.9
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 7.2e-19 98.6 194 33.0
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 1.6e-18 97.4 189 31.7
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 2.1e-18 97.1 198 30.8
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 2.1e-18 97.1 198 32.8
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 4.7e-18 95.9 207 31.4
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 1.0e-17 94.7 195 35.4
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 2.3e-17 93.6 203 32.0
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 2.3e-17 93.6 204 32.8
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 4.0e-17 92.8 190 37.9
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 5.2e-17 92.4 142 33.8
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 6.8e-17 92.0 193 32.1
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 8.8e-17 91.7 199 29.6
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 8.8e-17 91.7 203 32.5
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 1.2e-16 91.3 195 28.7
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 1.2e-16 91.3 192 30.7
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 1.5e-16 90.9 202 30.7
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.6e-16 90.1 204 32.4
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 3.4e-16 89.7 204 28.9
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 9.8e-16 88.2 91 45.1
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 1.3e-15 87.8 202 31.2
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 1.3e-15 87.8 189 31.7
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 6.3e-15 85.5 191 31.9
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 6.3e-15 85.5 202 28.7
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 8.3e-15 85.1 80 47.5
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 1.1e-14 84.7 200 32.5
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.8e-14 84.0 91 42.9
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.4e-14 83.6 87 44.8
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 3.1e-14 83.2 148 34.5
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 4.1e-14 82.8 201 28.4
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 4.1e-14 82.8 193 32.1
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 1.2e-13 81.3 229 29.7
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 2.0e-13 80.5 93 37.6
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 4.5e-13 79.3 81 42.0
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 5.9e-13 79.0 211 29.4
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 7.7e-13 78.6 191 29.3
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 7.7e-13 78.6 191 29.3
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 1.0e-12 78.2 76 44.7
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 1.3e-12 77.8 201 31.8
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 1.3e-12 77.8 93 39.8
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 3.8e-12 76.3 106 33.0
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 6.5e-12 75.5 83 45.8
Glyma.02G038900 Glycine max HOM05D002002 ORTHO05D003658 6.5e-12 75.5 233 30.0
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 6.5e-12 75.5 242 30.2
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 6.5e-12 75.5 80 41.2
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 8.6e-12 75.1 249 27.7
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 2.5e-11 73.6 83 39.8
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 2.5e-11 73.6 78 48.7
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 2.5e-11 73.6 84 39.3
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 3.2e-11 73.2 71 38.0
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 3.2e-11 73.2 86 41.9
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 3.2e-11 73.2 94 35.1
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 3.2e-11 73.2 71 42.3
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 5.5e-11 72.4 84 35.7
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 7.2e-11 72.0 73 41.1
Peaxi162Scf00332g00034 Petunia axillaris HOM05D007028 ORTHO05D003658 7.2e-11 72.0 85 41.2
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 9.5e-11 71.6 204 25.5
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 9.5e-11 71.6 81 37.0
Gohir.D05G121800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 1.2e-10 71.2 249 26.9
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 1.2e-10 71.2 87 42.5
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.2e-10 71.2 191 26.2
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 1.6e-10 70.9 83 42.2
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 1.6e-10 70.9 76 40.8
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 1.6e-10 70.9 80 38.8
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 1.6e-10 70.9 80 38.8
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 2.1e-10 70.5 85 35.3
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 2.1e-10 70.5 76 43.4
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 2.8e-10 70.1 70 40.0
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 3.6e-10 69.7 76 39.5
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 4.7e-10 69.3 94 37.2
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 4.7e-10 69.3 71 45.1
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 6.1e-10 68.9 99 38.4
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 8.0e-10 68.6 71 36.6
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 8.0e-10 68.6 188 27.1
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 8.0e-10 68.6 196 28.6
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 8.0e-10 68.6 93 39.8
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 1.0e-09 68.2 101 33.7
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 1.0e-09 68.2 86 39.5
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 1.0e-09 68.2 213 26.3
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 1.0e-09 68.2 105 35.2
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.4e-09 67.8 79 40.5
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 1.4e-09 67.8 82 40.2
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 1.4e-09 67.8 94 37.2
Nitab4.5_0001454g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 1.4e-09 67.8 206 29.1
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 1.8e-09 67.4 71 42.3
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 1.8e-09 67.4 233 27.0
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 2.3e-09 67.0 158 31.6
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.3e-09 67.0 71 42.3
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.3e-09 67.0 71 42.3
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 3.0e-09 66.6 71 42.3
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 3.0e-09 66.6 105 34.3
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 3.0e-09 66.6 155 29.0
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 4.0e-09 66.2 120 33.3
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 4.0e-09 66.2 120 33.3
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.0e-09 66.2 79 39.2
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 5.2e-09 65.9 190 25.8
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 5.2e-09 65.9 93 37.6
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 6.8e-09 65.5 70 40.0
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 6.8e-09 65.5 174 30.5
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 8.8e-09 65.1 209 25.4
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 8.8e-09 65.1 76 40.8
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 8.8e-09 65.1 71 40.8
Cpa.g.sc10.116 Carica papaya HOM05D007028 ORTHO05D003658 1.2e-08 64.7 189 27.5
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 1.5e-08 64.3 212 25.9
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 2.0e-08 63.9 212 26.4
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 2.0e-08 63.9 152 30.9
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 2.0e-08 63.9 167 29.9
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 2.0e-08 63.9 164 30.5
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 2.6e-08 63.5 159 31.4
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 3.4e-08 63.2 71 40.8
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 3.4e-08 63.2 103 34.0
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 4.4e-08 62.8 71 32.4
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 4.4e-08 62.8 71 38.0
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 4.4e-08 62.8 71 38.0
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 7.5e-08 62.0 152 27.6
Lj1g0008030 Lotus japonicus HOM05D007028 ORTHO05D003658 7.5e-08 62.0 92 32.6
Os03g0844850 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D003658 7.5e-08 62.0 89 36.0
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 7.5e-08 62.0 139 28.8
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 9.8e-08 61.6 225 26.2
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.3e-07 61.2 109 33.9
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.3e-07 61.2 109 33.9
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 1.3e-07 61.2 90 31.1
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 2.2e-07 60.5 123 30.9
ATR0215G020 Amborella trichopoda HOM05D007028 ORTHO05D003658 2.8e-07 60.1 85 31.8
ATR0215G032 Amborella trichopoda HOM05D007028 ORTHO05D003658 3.7e-07 59.7 81 32.1
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 4.9e-07 59.3 194 24.7
Gorai.009G125300 Gossypium raimondii HOM05D007028 ORTHO05D003658 4.9e-07 59.3 238 26.1
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 6.3e-07 58.9 93 34.4
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 6.3e-07 58.9 150 28.0
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 8.3e-07 58.5 132 29.5
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 8.3e-07 58.5 137 27.0
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.8e-06 57.4 152 28.9
Lj3g0003871 Lotus japonicus HOM05D007028 ORTHO05D003658 1.8e-06 57.4 207 25.6
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 2.4e-06 57.0 165 27.3
VMungo1215G2343 Vigna mungo HOM05D000068 ORTHO05D004691 5.4e-06 55.8 84 34.5
arahy.Tifrunner.gnm1.ann1.RXM0S4 Arachis hypogaea HOM05D007028 ORTHO05D003658 9.2e-06 55.1 73 34.2
arahy.Tifrunner.gnm1.ann1.W3CHFV Arachis hypogaea HOM05D007028 ORTHO05D003658 9.2e-06 55.1 73 34.2


User provided reference genes

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