Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.1e-43 179.5 86 100.0
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 5.2e-17 90.9 45 97.8
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 1.2e-16 89.7 45 95.6
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 3.4e-16 88.2 45 95.6
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 9.8e-16 86.7 45 91.1
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.5e-13 78.2 45 82.2
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 2.3e-12 75.5 45 80.0
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 5.0e-12 74.3 45 77.8
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 5.0e-12 74.3 45 77.8
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 1.1e-11 73.2 45 77.8
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.1e-11 73.2 45 73.3
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 1.5e-11 72.8 45 75.6
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.9e-11 72.4 45 82.2
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 3.3e-11 71.6 45 73.3
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 3.3e-11 71.6 52 65.4
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 4.2e-11 71.2 45 73.3
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 4.2e-11 71.2 45 73.3
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 5.5e-11 70.9 45 71.1
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 7.2e-11 70.5 46 76.1
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 9.5e-11 70.1 45 71.1
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 9.5e-11 70.1 45 73.3
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 2.1e-10 68.9 45 71.1
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.1e-10 68.9 45 77.8
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 4.7e-10 67.8 45 66.7
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 4.7e-10 67.8 45 68.9
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 6.1e-10 67.4 52 61.5
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 8.0e-10 67.0 45 71.1
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 8.0e-10 67.0 68 52.9
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 1.0e-09 66.6 45 71.1
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 1.0e-09 66.6 51 68.6
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.4e-09 66.2 45 68.9
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.4e-09 66.2 45 68.9
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.4e-09 66.2 45 68.9
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 1.8e-09 65.9 45 66.7
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 1.8e-09 65.9 45 66.7
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.8e-09 65.9 45 71.1
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.8e-09 65.9 43 72.1
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 1.8e-09 65.9 45 66.7
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.3e-09 65.5 49 67.3
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.3e-09 65.5 49 67.3
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.3e-09 65.5 49 67.3
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.3e-09 65.5 58 55.2
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 3.0e-09 65.1 45 66.7
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.0e-09 65.1 45 68.9
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 4.0e-09 64.7 45 71.1
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 4.0e-09 64.7 45 64.4
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.2e-09 64.3 45 66.7
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 5.2e-09 64.3 45 71.1
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 6.8e-09 63.9 45 66.7
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 6.8e-09 63.9 45 71.1
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 6.8e-09 63.9 45 64.4
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 8.9e-09 63.5 45 66.7
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 8.9e-09 63.5 45 71.1
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 8.9e-09 63.5 45 68.9
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.2e-08 63.2 45 68.9
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.2e-08 63.2 45 68.9
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.2e-08 63.2 45 68.9
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.5e-08 62.8 45 68.9
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.5e-08 62.8 69 49.3
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 2.0e-08 62.4 45 66.7
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 2.0e-08 62.4 45 66.7
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 3.4e-08 61.6 45 66.7
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 7.5e-08 60.5 48 66.7
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 7.5e-08 60.5 48 66.7
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 7.5e-08 60.5 47 61.7
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 7.5e-08 60.5 45 64.4
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 1.3e-07 59.7 45 64.4
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.7e-07 59.3 46 67.4
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 2.2e-07 58.9 45 64.4
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 2.8e-07 58.5 48 62.5
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.9e-07 57.8 45 57.8
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 8.3e-07 57.0 46 65.2
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 8.3e-07 57.0 44 68.2
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.1e-06 56.6 48 60.4
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.1e-06 56.6 45 60.0
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.4e-06 56.2 45 57.8
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.4e-06 56.2 45 66.7
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.8e-06 55.8 44 65.9
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 2.4e-06 55.5 45 60.0
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.4e-06 55.5 45 64.4
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.1e-06 55.1 45 55.6
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 4.1e-06 54.7 69 42.0
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 5.4e-06 54.3 45 60.0
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 7.0e-06 53.9 45 57.8
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 7.0e-06 53.9 45 62.2
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 9.2e-06 53.5 45 60.0


User provided reference genes

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