Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 4.6e-126 454.5 221 100.0
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 3.1e-106 388.7 191 97.9
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.1e-95 353.6 191 90.6
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 1.3e-88 330.1 192 86.5
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 4.4e-60 235.3 197 62.9
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 1.7e-59 233.4 204 63.7
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.1e-58 230.7 241 53.5
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.4e-58 230.3 197 61.4
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.8e-58 229.9 216 58.8
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 9.1e-58 227.6 197 60.9
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.6e-57 226.9 197 60.9
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.6e-57 226.9 206 62.1
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 5.0e-56 221.9 209 60.8
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 5.0e-56 221.9 191 60.7
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 8.5e-56 221.1 211 58.8
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.5e-55 219.5 211 57.8
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.2e-54 217.2 201 56.7
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 1.6e-54 216.9 202 58.4
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.8e-53 213.4 213 56.3
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 1.5e-52 210.3 220 57.7
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 2.0e-52 209.9 209 57.9
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 5.7e-52 208.4 253 49.8
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 5.7e-52 208.4 205 56.1
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.2e-51 206.5 190 56.3
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 3.7e-51 205.7 211 57.3
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 3.7e-51 205.7 201 56.2
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 6.3e-51 204.9 178 57.9
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.0e-50 201.4 202 58.9
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 7.0e-50 201.4 202 58.9
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 3.5e-49 199.1 207 54.6
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 5.9e-49 198.4 202 54.5
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-48 197.6 213 54.9
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.2e-48 196.4 202 57.4
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.2e-48 196.4 213 55.4
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 2.9e-48 196.1 172 59.3
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.5e-47 193.7 213 54.0
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.5e-47 193.7 216 51.4
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 5.5e-47 191.8 197 53.8
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 7.2e-47 191.4 224 49.6
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.6e-46 190.3 210 50.0
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 2.1e-46 189.9 230 49.1
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 4.0e-45 185.7 207 52.7
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 8.8e-45 184.5 191 57.1
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.0e-44 183.3 203 54.2
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 3.4e-44 182.6 197 52.3
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 4.4e-44 182.2 197 52.3
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 7.5e-44 181.4 193 51.3
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-43 180.6 203 53.2
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-43 180.6 203 53.7
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 1.7e-43 180.3 242 48.8
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 4.9e-43 178.7 204 49.0
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 8.3e-43 177.9 209 53.1
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 5.4e-42 175.3 191 49.2
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 9.2e-42 174.5 225 47.1
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 4.5e-41 172.2 208 49.0
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.7e-40 170.2 228 46.9
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 2.9e-40 169.5 224 48.2
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 2.9e-40 169.5 205 52.2
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 3.8e-40 169.1 204 47.5
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 5.0e-40 168.7 217 47.9
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.5e-39 167.2 207 48.8
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.5e-39 167.2 209 51.7
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 3.3e-39 166.0 142 60.6
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 2.8e-38 162.9 201 49.3
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 4.7e-38 162.2 210 51.4
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 6.1e-38 161.8 183 50.3
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 4.0e-37 159.1 203 46.3
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.0e-36 156.8 185 47.0
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.7e-36 155.2 193 46.1
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 7.5e-36 154.8 209 46.9
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-35 154.1 203 45.8
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-35 154.1 203 45.8
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.3e-35 154.1 203 45.8
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.7e-35 153.7 204 47.1
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.7e-35 153.7 219 46.6
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.2e-35 153.3 192 45.3
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.2e-35 153.3 199 45.2
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 2.9e-35 152.9 210 44.8
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 3.7e-35 152.5 221 45.2
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 4.9e-35 152.1 206 46.1
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 6.4e-35 151.8 206 45.6
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 6.4e-35 151.8 196 46.9
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 8.3e-35 151.4 201 47.8
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 8.3e-35 151.4 201 47.8
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-34 151.0 207 44.9
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 1.1e-34 151.0 199 45.7
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.4e-34 150.6 205 46.8
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.8e-34 150.2 205 46.3
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-34 149.8 206 45.6
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-34 149.8 206 45.6
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 2.4e-34 149.8 206 45.6
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 2.4e-34 149.8 203 45.3
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 3.2e-34 149.4 214 43.9
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 3.2e-34 149.4 190 47.4
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 3.2e-34 149.4 206 44.7
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 4.1e-34 149.1 201 45.3
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 4.1e-34 149.1 205 45.4
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 4.1e-34 149.1 201 45.3
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 4.1e-34 149.1 205 45.4
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.1e-34 149.1 172 49.4
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 5.4e-34 148.7 203 45.3
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 5.4e-34 148.7 209 45.9
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 5.4e-34 148.7 185 46.5
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 7.0e-34 148.3 206 45.1
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.0e-34 148.3 172 48.8
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 9.2e-34 147.9 194 44.8
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.2e-33 147.5 181 47.0
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 4.6e-33 145.6 202 43.6
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 5.9e-33 145.2 208 47.6
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.9e-33 145.2 177 45.8
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 7.8e-33 144.8 166 49.4
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 3.0e-32 142.9 209 44.0
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 6.6e-32 141.7 192 42.7
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 6.6e-32 141.7 195 45.6
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 8.6e-32 141.4 208 43.3
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 2.5e-31 139.8 229 43.7
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 3.3e-31 139.4 200 44.5
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 7.3e-31 138.3 202 45.0
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.2e-30 137.5 174 46.6
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 2.1e-30 136.7 191 46.6
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 6.2e-30 135.2 168 45.2
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 6.2e-30 135.2 226 42.0
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 8.0e-30 134.8 194 43.8
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 8.0e-30 134.8 200 45.5
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 8.0e-30 134.8 213 43.2
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 2.3e-29 133.3 223 41.3
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 2.6e-28 129.8 220 40.9
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 2.2e-27 126.7 185 41.1
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.7e-27 125.9 186 41.9
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 4.1e-26 122.5 175 42.9
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 7.0e-26 121.7 166 42.8
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 8.6e-24 114.8 260 36.2
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.1e-23 114.4 247 36.8
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.5e-23 113.2 219 36.1
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.3e-23 112.8 178 39.3
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 7.3e-23 111.7 182 37.4
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.1e-21 107.8 169 39.1
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 4.0e-21 105.9 192 39.6
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.8e-21 105.1 122 50.0
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 6.8e-21 105.1 147 44.9
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 1.5e-20 104.0 190 37.4
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.6e-20 103.2 169 37.9
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 2.6e-20 103.2 101 55.4
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 5.8e-20 102.1 219 34.7
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 7.5e-20 101.7 120 50.0
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 1.3e-19 100.9 96 54.2
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.7e-19 100.5 175 40.0
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.4e-19 98.6 198 38.4
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 4.6e-17 92.4 205 33.2
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 6.0e-17 92.0 190 37.4
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 7.8e-17 91.7 155 40.0
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.0e-16 91.3 197 33.5
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 2.3e-16 90.1 103 47.6
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 3.9e-16 89.4 179 38.5
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 3.9e-16 89.4 179 38.5
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 5.1e-16 89.0 179 38.0
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 8.6e-16 88.2 198 36.9
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 8.6e-16 88.2 198 36.9
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.1e-14 83.6 160 38.8
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 3.6e-14 82.8 197 34.0
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.4e-13 80.9 163 34.4
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 1.8e-13 80.5 131 44.3
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 5.2e-13 79.0 81 55.6
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.6e-12 76.6 192 30.7
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 9.9e-12 74.7 175 33.1
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 3.2e-10 69.7 158 32.3
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 4.1e-10 69.3 239 28.9
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 3.5e-09 66.2 169 33.1
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.3e-08 64.3 93 40.9
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.3e-08 63.5 154 30.5
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 8.6e-08 61.6 80 45.0


User provided reference genes

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