Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 9.2e-195 683.3 335 100.0
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 9.3e-171 603.6 315 94.9
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 1.3e-159 566.6 315 88.9
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 2.1e-146 522.7 316 80.7
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 1.7e-119 433.3 303 68.0
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 4.8e-119 431.8 303 69.3
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 2.6e-117 426.0 290 69.0
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 1.0e-116 424.1 310 65.2
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 5.0e-116 421.8 321 64.5
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 2.1e-114 416.4 303 66.7
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 2.7e-114 416.0 303 66.0
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 3.6e-114 415.6 304 67.4
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 4.7e-114 415.2 306 66.0
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 8.0e-114 414.5 300 67.0
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 1.0e-113 414.1 321 63.9
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 1.8e-113 413.3 284 70.4
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 2.3e-113 412.9 302 65.9
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 8.8e-113 411.0 305 65.9
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 1.2e-112 410.6 294 65.6
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.0e-112 409.8 290 65.9
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 3.3e-112 409.1 305 64.3
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 3.3e-112 409.1 325 63.1
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 3.3e-112 409.1 327 63.6
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 4.4e-112 408.7 317 63.4
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 9.7e-112 407.5 341 58.9
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 9.7e-112 407.5 302 67.2
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 2.2e-111 406.4 304 65.1
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 2.8e-111 406.0 295 65.8
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 3.7e-111 405.6 283 67.1
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 3.7e-111 405.6 283 67.5
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 4.8e-111 405.2 311 62.4
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 1.1e-110 404.1 304 65.1
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 3.1e-110 402.5 291 67.7
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 7.0e-110 401.4 290 66.9
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 7.0e-110 401.4 307 64.5
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 7.7e-109 397.9 298 65.4
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 7.7e-109 397.9 307 62.5
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 1.0e-108 397.5 307 63.8
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 2.2e-108 396.4 293 65.5
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 2.9e-108 396.0 303 62.7
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 5.0e-108 395.2 308 61.7
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 4.2e-107 392.1 303 61.7
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 7.2e-107 391.3 304 62.5
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 9.4e-107 391.0 307 60.9
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 2.1e-106 389.8 303 62.4
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 2.7e-106 389.4 303 60.7
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 3.6e-106 389.0 309 60.8
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 1.4e-105 387.1 312 60.6
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 2.3e-105 386.3 290 64.5
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 4.0e-105 385.6 306 60.5
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 5.2e-105 385.2 292 63.0
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 1.2e-104 384.0 307 60.6
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 1.5e-104 383.6 303 62.4
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 2.0e-104 383.3 308 63.6
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 2.0e-104 383.3 292 63.0
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 2.6e-104 382.9 305 61.3
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 1.3e-103 380.6 323 58.2
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 1.3e-103 380.6 306 60.5
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 1.3e-103 380.6 290 63.8
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 2.2e-103 379.8 292 64.0
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 1.1e-102 377.5 300 59.7
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 1.1e-102 377.5 303 59.1
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 7.0e-102 374.8 302 60.6
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 2.0e-101 373.2 295 59.0
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 3.5e-101 372.5 307 58.3
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 5.9e-101 371.7 301 60.1
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 5.9e-101 371.7 315 58.1
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 5.9e-101 371.7 284 62.3
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 1.3e-100 370.5 295 59.3
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 2.9e-100 369.4 295 59.3
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 2.9e-100 369.4 300 59.3
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 5.0e-100 368.6 305 58.7
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 5.0e-100 368.6 253 68.0
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 8.6e-100 367.9 301 59.1
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 8.6e-100 367.9 300 59.3
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 8.6e-100 367.9 302 59.6
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 8.6e-100 367.9 302 59.6
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 1.5e-99 367.1 300 59.0
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 1.9e-99 366.7 333 53.2
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 2.5e-99 366.3 302 57.3
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 3.2e-99 365.9 265 66.8
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 9.5e-99 364.4 319 57.4
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 1.2e-98 364.0 293 58.0
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 1.0e-97 360.9 287 61.3
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 5.2e-97 358.6 302 57.0
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 2.6e-96 356.3 304 59.9
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 7.5e-96 354.8 313 56.9
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 2.2e-95 353.2 295 58.3
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 2.8e-95 352.8 300 57.0
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 4.9e-95 352.1 309 57.9
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 1.6e-93 347.1 248 66.9
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 4.7e-90 335.5 286 54.9
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.8e-89 333.6 299 56.9
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 9.8e-88 327.8 240 67.5
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 3.9e-84 315.8 204 71.1
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 1.5e-83 313.9 327 51.4
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 3.1e-81 306.2 256 60.2
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 5.8e-80 302.0 300 53.3
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 9.8e-80 301.2 202 68.8
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 4.6e-77 292.4 285 51.2
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 6.0e-77 292.0 317 49.8
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 9.5e-75 284.6 314 50.6
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 1.1e-73 281.2 226 62.4
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 1.4e-73 280.8 327 50.2
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 1.7e-71 273.9 283 48.8
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 2.4e-70 270.0 394 38.3
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 6.6e-68 261.9 219 59.8
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 1.2e-66 257.7 218 60.6
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 1.4e-65 254.2 405 37.5
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 1.5e-64 250.8 287 46.3
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 4.1e-62 242.7 226 57.1
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 5.6e-59 232.3 406 34.0
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 1.8e-49 200.7 162 62.3
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.0e-48 197.2 154 63.6
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 2.2e-47 193.7 121 75.2
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 6.4e-47 192.2 304 39.1
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 1.1e-43 181.4 176 56.2
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 5.6e-43 179.1 346 34.4
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 6.7e-36 155.6 108 71.3
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 7.4e-35 152.1 252 36.5
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 5.3e-33 146.0 266 35.0
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 3.8e-31 139.8 82 73.2
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 6.0e-29 132.5 85 68.2
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 4.3e-27 126.3 83 61.4
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 1.3e-26 124.8 173 45.1
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 1.2e-24 118.2 106 51.9
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 4.5e-24 116.3 114 49.1
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.0e-20 105.1 62 74.2
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 3.0e-20 103.6 61 72.1
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 1.7e-10 71.2 56 62.5
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 3.1e-09 67.0 120 35.0
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 1.0e-07 62.0 180 28.3


User provided reference genes

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