Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010535.2 Cucumis melo HOM05D006619 ORTHO05D008351 1.7e-155 552.7 298 100.0
CsaV3_4G014810 Cucumis sativus L. HOM05D006619 ORTHO05D008351 1.7e-144 516.2 302 92.7
ClCG11G016190 Citrullus lanatus HOM05D006619 ORTHO05D008351 1.2e-137 493.4 295 91.2
Sed0005654 Sechium edule HOM05D006619 ORTHO05D008351 1.0e-104 384.0 279 77.8
Sed0000478 Sechium edule HOM05D006619 ORTHO05D008351 2.4e-101 372.9 278 76.3
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 9.7e-71 271.2 304 53.6
Prupe.5G014600 Prunus persica HOM05D006619 ORTHO05D008351 8.5e-67 258.1 302 51.3
FAN08G1468 Fragaria x ananassa HOM05D006619 ORTHO05D008351 2.5e-66 256.5 309 51.1
FAN18G2839 Fragaria x ananassa HOM05D006619 ORTHO05D008351 4.2e-66 255.8 311 51.1
GSVIVG01036901001 Vitis vinifera HOM05D006619 ORTHO05D008351 1.6e-65 253.8 306 50.7
FvH4_5g24810 Fragaria vesca HOM05D006619 ORTHO05D008351 2.7e-65 253.1 311 50.8
FAN04G1190 Fragaria x ananassa HOM05D006619 ORTHO05D008351 2.0e-63 246.9 308 49.4
Thecc.03G321400 Theobroma cacao HOM05D006619 ORTHO05D008351 1.1e-61 241.1 304 49.3
CiPaw.11G070000 Carya illinoinensis HOM05D006619 ORTHO05D008351 2.4e-61 240.0 292 51.4
FAN13G0980 Fragaria x ananassa HOM05D006619 ORTHO05D008351 4.1e-61 239.2 318 49.7
Lalb_Chr05g0215221 Lupinus albus HOM05D006619 ORTHO05D008351 4.1e-61 239.2 293 47.4
RcHm_v2.0_Chr7g0215151 Rosa chinensis HOM05D006619 ORTHO05D008351 7.0e-61 238.4 295 49.2
Glyma.09G217700 Glycine max HOM05D006619 ORTHO05D008351 1.2e-60 237.7 291 48.8
Lj2g0025157 Lotus japonicus HOM05D006619 ORTHO05D008351 3.5e-60 236.1 290 49.3
MD06G1011900 Malus domestica HOM05D006619 ORTHO05D008351 4.5e-60 235.7 302 47.7
Glyma.01G152500 Glycine max HOM05D006619 ORTHO05D008351 2.2e-59 233.4 309 46.0
TAR629G0027 Trochodendron aralioides HOM05D006619 ORTHO05D008351 5.0e-59 232.3 305 46.6
Gohir.D08G169400 Gossypium hirsutum HOM05D006619 ORTHO05D008351 6.5e-59 231.9 303 45.9
Duzib084G0833 Durio zibethinus HOM05D006619 ORTHO05D008351 1.1e-58 231.1 305 48.2
Gohir.A08G148300 Gossypium hirsutum HOM05D006619 ORTHO05D008351 1.1e-58 231.1 305 45.6
Gorai.004G176600 Gossypium raimondii HOM05D006619 ORTHO05D008351 1.9e-58 230.3 303 45.5
Lalb_Chr16g0380481 Lupinus albus HOM05D006619 ORTHO05D008351 2.7e-57 226.5 289 46.4
Rhsim07G0140900 Rhododendron simsii HOM05D006619 ORTHO05D008351 1.4e-56 224.2 305 46.2
COL.COLO4_16736 Corchorus olitorius HOM05D006619 ORTHO05D008351 8.8e-56 221.5 297 44.1
Psat0s808g0080 Pisum sativum HOM05D006619 ORTHO05D008351 2.0e-55 220.3 292 47.3
Actinidia18172 Actinidia chinensis HOM05D006619 ORTHO05D008351 2.6e-55 219.9 306 44.4
Medtr5g025800 Medicago truncatula HOM05D006619 ORTHO05D008351 4.4e-55 219.2 294 45.9
Ca_25054_v3 Cicer arietinum L. HOM05D006619 ORTHO05D008351 7.5e-55 218.4 295 47.1
PGR031G2471 Punica granatum HOM05D006619 ORTHO05D008351 2.4e-53 213.4 308 42.5
TPR.G7876 Trifolium pratense HOM05D006619 ORTHO05D008351 2.4e-53 213.4 291 44.7
HanXRQChr06g0173221 Helianthus annuus HOM05D006619 ORTHO05D008351 1.2e-52 211.1 294 43.9
Atru.chr6.2146 Acer truncatum HOM05D006619 ORTHO05D008351 1.6e-52 210.7 305 43.6
Duzib205G1329 Durio zibethinus HOM05D006619 ORTHO05D008351 7.7e-52 208.4 295 45.8
Sabra01G0179200 Salix brachista HOM05D006619 ORTHO05D008351 7.7e-52 208.4 298 45.6
TWI60G1390 Tripterygium wilfordii HOM05D006619 ORTHO05D008351 2.2e-51 206.8 290 44.8
PSO170G1900 Papaver somniferum HOM05D006619 ORTHO05D008351 5.0e-51 205.7 303 42.6
Ciclev10001580m.g Citrus clementina HOM05D006619 ORTHO05D008351 8.5e-51 204.9 307 43.3
Cfa012616 Carpinus fangiana HOM05D006619 ORTHO05D008351 1.1e-50 204.5 295 46.8
Lsat_1_v5_gn_3_19920 Lactuca sativa HOM05D006619 ORTHO05D008351 1.9e-50 203.8 285 43.2
Manes.17G002400 Manihot esculenta HOM05D006619 ORTHO05D008351 1.9e-50 203.8 294 45.2
PSO017G2194 Papaver somniferum HOM05D006619 ORTHO05D008351 2.5e-50 203.4 307 42.0
PGSC0003DMG400020810 Solanum tuberosum HOM05D006619 ORTHO05D008351 2.1e-49 200.3 304 44.1
Eucgr.D02571 Eucalyptus grandis HOM05D006619 ORTHO05D008351 4.7e-49 199.1 308 41.6
CSS0018284 Camellia sinensis var. sinensis HOM05D006619 ORTHO05D008351 8.0e-49 198.4 266 49.6
Lj8A366T23 Lonicera japonica HOM05D006619 ORTHO05D008351 1.0e-48 198.0 292 42.8
Phvul.002G123000 Phaseolus vulgaris HOM05D006619 ORTHO05D008351 1.0e-48 198.0 291 41.9
Potri.004G234300 Populus trichocarpa HOM05D006619 ORTHO05D008351 1.0e-48 198.0 274 47.4
Peaxi162Scf00014g02116 Petunia axillaris HOM05D006619 ORTHO05D008351 1.8e-48 197.2 309 43.4
Sopen08g023780 Solanum pennellii HOM05D006619 ORTHO05D008351 2.3e-48 196.8 303 43.2
AUR62010492 Chenopodium quinoa HOM05D006619 ORTHO05D008351 2.6e-47 193.4 287 42.9
VMungo1215G3049 Vigna mungo HOM05D006619 ORTHO05D008351 1.3e-46 191.0 295 42.0
Solyc08g075150.3 Solanum lycopersicum HOM05D006619 ORTHO05D008351 6.3e-46 188.7 299 42.8
Dinv09413 Davidia involucrata HOM05D006619 ORTHO05D008351 8.3e-46 188.3 253 48.2
ECA246G4124 Erigeron canadensis HOM05D006619 ORTHO05D008351 1.8e-45 187.2 297 42.8
Migut.E01382 Erythranthe guttata HOM05D006619 ORTHO05D008351 2.4e-45 186.8 296 43.6
Nitab4.5_0000236g0060 Nicotiana tabacum HOM05D006619 ORTHO05D008351 4.1e-45 186.0 317 42.9
EL10Ac5g12595 Beta vulgaris HOM05D006619 ORTHO05D008351 4.5e-44 182.6 280 44.3
Ah.12g058350 Amaranthus hybridus HOM05D006619 ORTHO05D008351 1.7e-43 180.6 283 41.3
DCAR_004540 Daucus carota HOM05D006619 ORTHO05D008351 2.2e-43 180.3 302 40.1
THA.LOC104811203 Tarenaya hassleriana HOM05D006619 ORTHO05D008351 2.2e-43 180.3 287 42.5
Nitab4.5_0000975g0010 Nicotiana tabacum HOM05D006619 ORTHO05D008351 2.9e-43 179.9 317 42.3
Cc08_g06080 Coffea canephora HOM05D006619 ORTHO05D008351 1.5e-42 177.6 305 39.3
Sc07g0008130 Simmondsia chinensis HOM05D006619 ORTHO05D008351 1.9e-42 177.2 290 40.7
AUR62017411 Chenopodium quinoa HOM05D006619 ORTHO05D008351 5.5e-42 175.6 286 40.9
CDE01G0342 Ceratophyllum demersum HOM05D006619 ORTHO05D008351 3.6e-41 172.9 281 40.9
Aqoxy3G01986 Aquilegia oxysepala HOM05D006619 ORTHO05D008351 6.1e-41 172.2 304 39.1
Haze_08039 Corylus avellana HOM05D006619 ORTHO05D008351 8.0e-41 171.8 267 44.2
Haze_08049 Corylus avellana HOM05D006619 ORTHO05D008351 1.0e-40 171.4 267 44.6
QL12p003333 Quercus lobata HOM05D006619 ORTHO05D008351 1.8e-40 170.6 205 51.7
ATR0568G188 Amborella trichopoda HOM05D006619 ORTHO05D008351 2.0e-39 167.2 301 38.9
Nn1g09329 Nelumbo nucifera HOM05D006619 ORTHO05D008351 7.5e-39 165.2 215 48.4
CANSAT35G0271 Cannabis sativa HOM05D006619 ORTHO05D008351 2.8e-38 163.3 284 39.1
arahy.Tifrunner.gnm1.ann1.7E2RQS Arachis hypogaea HOM05D006619 ORTHO05D008351 6.3e-38 162.2 268 41.8
arahy.Tifrunner.gnm1.ann1.TY5C82 Arachis hypogaea HOM05D006619 ORTHO05D008351 6.3e-38 162.2 268 41.8
Manes.15G190475 Manihot esculenta HOM05D006619 ORTHO05D008351 1.4e-37 161.0 226 47.8
Hund14312 Selenicereus undatus HOM05D006619 ORTHO05D008351 4.5e-36 156.0 261 39.8
Cpa.g.sc137.4 Carica papaya HOM05D006619 ORTHO05D008351 1.2e-33 147.9 269 38.3
SEGI_11154 Sequoiadendron giganteum HOM05D006619 ORTHO05D008351 4.0e-32 142.9 295 36.3
Sp2g10250 Schrenkiella parvula HOM05D006619 ORTHO05D008351 8.9e-32 141.7 282 34.4
CARHR176830 Cardamine hirsuta HOM05D006619 ORTHO05D008351 2.6e-31 140.2 298 33.6
AL8G13490 Arabidopsis lyrata HOM05D006619 ORTHO05D008351 3.4e-31 139.8 298 33.6
BcaB07g30899 Brassica carinata HOM05D006619 ORTHO05D008351 7.5e-31 138.7 282 34.8
BcaC04g21786 Brassica carinata HOM05D006619 ORTHO05D008351 1.3e-30 137.9 282 35.1
C09p27640 Brassica napus HOM05D006619 ORTHO05D008351 1.3e-30 137.9 282 35.1
BolC9t55627H Brassica oleracea HOM05D006619 ORTHO05D008351 1.3e-30 137.9 282 35.1
Thhalv10001132m.g Eutrema salsugineum HOM05D006619 ORTHO05D008351 2.2e-30 137.1 286 33.9
AT5G45310 Arabidopsis thaliana HOM05D006619 ORTHO05D008351 1.1e-29 134.8 288 33.7
BraA09t37763Z Brassica rapa HOM05D006619 ORTHO05D008351 2.4e-29 133.7 282 34.4
A09p21640 Brassica napus HOM05D006619 ORTHO05D008351 1.2e-28 131.3 282 34.4
SHI32758 Sapria himalayana HOM05D006619 ORTHO05D008351 2.7e-28 130.2 321 32.1
SGA_v2.0_scaffold121G33054 Striga asiatica HOM05D006619 ORTHO05D008351 7.8e-28 128.6 284 33.5
Oeu045949.2 Olea europaea HOM05D006619 ORTHO05D008351 4.7e-25 119.4 143 49.7
Aa31LG9G7710 Aethionema arabicum HOM05D006619 ORTHO05D008351 6.2e-25 119.0 292 32.2
Carub.0008s0284 Capsella rubella HOM05D006619 ORTHO05D008351 3.1e-24 116.7 282 31.9
SalBow1G1985 Salvia bowleyana HOM05D006619 ORTHO05D008351 2.6e-23 113.6 291 33.3
SalBow8G3333 Salvia bowleyana HOM05D006619 ORTHO05D008351 9.8e-23 111.7 291 33.0
MELO3C000488.2 Cucumis melo HOM05D006619 ORTHO05D008351 2.4e-21 107.1 60 95.0
MELO3C027856.2 Cucumis melo HOM05D006619 ORTHO05D008351 2.4e-21 107.1 60 95.0
MELO3C035501.2 Cucumis melo HOM05D006619 ORTHO05D008351 2.4e-21 107.1 60 95.0
Pp3c25_50 Physcomitrium patens HOM05D006619 ORTHO05D008351 9.2e-21 105.1 288 29.5
HPP92_015143 Vanilla planifolia HOM05D000346 ORTHO05D004932 1.7e-19 100.9 282 29.1
Zm00001eb140380 Zea mays HOM05D006619 ORTHO05D008351 2.3e-19 100.5 286 29.0
SMO367G0687 Selaginella moellendorffii HOM05D003392 ORTHO05D003801 1.1e-18 98.2 292 28.8
AagrBONN_evm.TU.Sc2ySwM_344.2089 Anthoceros agrestis HOM05D006619 ORTHO05D008351 4.3e-18 96.3 297 28.6
AagrBONN_evm.TU.Sc2ySwM_117.1666 Anthoceros agrestis HOM05D006619 ORTHO05D008351 1.1e-16 91.7 276 28.6
EL10Ac5g12596 Beta vulgaris HOM05D006619 ORTHO05D008351 5.8e-15 85.9 135 40.7
Os01g0962100 Oryza sativa ssp. japonica HOM05D006619 ORTHO05D008351 1.1e-13 81.6 253 29.2
COL.COLO4_16514 Corchorus olitorius HOM05D006619 ORTHO05D008351 2.4e-13 80.5 219 32.0
QL12p003340 Quercus lobata HOM05D006619 ORTHO05D008351 7.1e-13 79.0 164 38.4
Hund28917 Selenicereus undatus HOM05D006619 ORTHO05D008351 2.1e-09 67.4 82 43.9
Hund28918 Selenicereus undatus HOM05D006619 ORTHO05D008351 2.1e-09 67.4 82 43.9
HanXRQChr04g0096591 Helianthus annuus HOM05D006619 ORTHO05D008351 1.5e-07 61.2 63 49.2
MD16G1286500 Malus domestica HOM05D006619 ORTHO05D008351 9.9e-07 58.5 130 36.2


User provided reference genes

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