Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 0.0e+00 1407.5 722 100.0
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 0.0e+00 1308.1 696 96.6
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 0.0e+00 1268.4 696 94.1
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 0.0e+00 1234.2 696 91.8
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1114.4 696 82.3
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1109.0 696 82.0
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1105.9 690 82.0
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 0.0e+00 1099.3 693 81.5
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1094.0 697 81.1
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 0.0e+00 1091.3 698 80.5
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 0.0e+00 1091.3 694 80.5
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 0.0e+00 1088.2 697 80.8
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 0.0e+00 1087.0 693 80.7
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1085.9 708 79.7
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 0.0e+00 1083.6 697 80.1
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 0.0e+00 1083.6 700 78.9
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1081.6 690 80.6
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 0.0e+00 1080.1 697 80.2
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1078.5 698 79.7
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1078.2 718 78.0
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 0.0e+00 1077.4 697 79.9
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 0.0e+00 1077.0 733 77.4
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 0.0e+00 1075.1 699 79.4
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 4.9e-312 1073.5 690 79.9
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 1.3e-310 1069.3 702 79.3
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 5.4e-309 1063.9 697 79.5
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 1.3e-307 1059.3 745 75.3
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 1.9e-306 1055.4 695 78.3
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 3.3e-306 1054.7 697 79.1
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 4.3e-306 1054.3 698 78.5
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 7.3e-306 1053.5 692 77.9
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 9.5e-306 1053.1 680 79.9
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 1.8e-304 1048.9 694 77.1
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 2.3e-304 1048.5 691 78.9
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 3.4e-303 1044.6 697 77.9
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 5.8e-303 1043.9 699 77.4
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 7.5e-303 1043.5 696 77.4
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 1.7e-302 1042.3 692 77.6
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 3.7e-302 1041.2 696 76.9
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 3.2e-301 1038.1 691 78.0
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 7.1e-301 1036.9 697 76.8
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 1.2e-300 1036.2 689 76.6
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 3.5e-300 1034.6 718 76.5
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 7.8e-300 1033.5 691 76.3
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 3.9e-299 1031.2 692 76.4
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 1.1e-298 1029.6 692 76.7
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 3.3e-298 1028.1 697 77.8
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 5.6e-298 1027.3 692 76.3
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 9.5e-298 1026.5 691 77.3
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 8.9e-296 1020.0 719 72.6
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 2.0e-295 1018.8 712 75.4
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 2.6e-295 1018.5 692 77.5
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.8e-295 1017.3 691 76.6
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 2.2e-294 1015.4 693 76.3
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 2.9e-294 1015.0 696 75.6
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 3.8e-294 1014.6 699 75.4
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 4.9e-294 1014.2 692 76.3
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 6.4e-294 1013.8 695 75.0
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 1.1e-293 1013.1 742 72.9
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 7.8e-292 1006.9 648 80.1
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 1.9e-290 1002.3 694 74.5
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 3.6e-289 998.0 694 74.6
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 1.1e-288 996.5 690 75.1
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 3.1e-288 995.0 697 74.3
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 1.5e-287 992.6 690 74.8
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 5.8e-287 990.7 692 74.9
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 6.4e-286 987.3 690 74.3
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 2.1e-284 982.2 690 73.9
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 3.5e-284 981.5 690 73.6
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 7.8e-284 980.3 688 74.3
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 8.7e-283 976.9 692 73.7
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 4.3e-282 974.5 690 74.1
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 1.6e-281 972.6 690 73.2
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 1.6e-281 972.6 690 73.2
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 4.8e-281 971.1 690 73.0
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 1.1e-280 969.9 690 73.2
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 2.4e-280 968.8 802 65.0
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 4.0e-280 968.0 693 72.0
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 5.3e-280 967.6 692 73.3
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 9.0e-280 966.8 726 70.8
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 4.2e-277 958.0 691 71.6
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 9.3e-277 956.8 690 72.2
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 6.4e-270 934.1 701 68.5
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 8.4e-270 933.7 696 70.1
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 3.1e-264 915.2 1203 47.8
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 6.3e-257 891.0 557 81.7
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 3.1e-256 888.6 690 68.0
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 2.2e-254 882.5 692 68.1
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 7.7e-247 857.4 769 62.2
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 1.1e-240 837.0 722 61.6
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.3e-238 830.1 567 75.5
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 2.2e-233 812.8 726 58.5
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 2.8e-225 785.8 538 76.2
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 2.7e-220 769.2 511 76.7
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 7.2e-213 744.6 470 80.0
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 1.7e-209 733.4 519 72.6
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 2.3e-203 713.0 642 57.9
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 2.0e-202 709.9 695 57.1
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 2.2e-185 653.3 422 78.2
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 1.5e-141 507.7 719 42.3
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 2.1e-135 487.3 703 41.7
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 2.7e-127 460.3 697 44.9
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 2.7e-127 460.3 703 39.8
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 1.4e-123 448.0 694 44.1
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 5.7e-117 426.0 272 82.7
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 2.2e-116 424.1 274 79.2
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 2.0e-114 417.5 474 49.2
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 4.7e-111 406.4 660 42.3
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 7.5e-109 399.1 232 84.9
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 3.3e-96 357.1 438 50.5
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 4.3e-88 330.1 248 71.0
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 2.9e-84 317.4 678 35.5
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 8.3e-76 289.3 223 70.0
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 1.1e-70 272.3 294 55.8
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 3.6e-63 247.3 206 67.5
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 2.2e-60 238.0 168 71.4
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 8.7e-49 199.5 157 70.1
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 8.7e-49 199.5 157 70.1
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 1.2e-42 179.1 125 77.6
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 3.3e-40 171.0 101 81.2
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 1.3e-33 149.1 203 51.2
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 1.2e-29 136.0 114 60.5
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 9.7e-24 116.3 84 66.7
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 1.0e-17 96.3 64 78.1
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 1.8e-14 85.5 73 63.0
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 6.9e-14 83.6 150 38.0


User provided reference genes

Program Settings