Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 2.7e-56 221.9 119 100.0
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 1.4e-49 199.5 119 89.9
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 2.6e-43 178.7 119 79.8
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 2.7e-40 168.7 119 73.9
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 5.7e-30 134.4 119 60.5
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 1.8e-28 129.4 121 55.4
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 3.1e-28 128.6 120 60.0
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 5.3e-28 127.9 119 59.7
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 5.3e-28 127.9 119 57.1
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 1.5e-27 126.3 119 52.9
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 2.6e-27 125.6 119 56.3
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 3.4e-27 125.2 119 56.3
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 5.8e-27 124.4 119 56.3
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 5.8e-27 124.4 118 56.8
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 1.3e-26 123.2 121 57.0
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 1.1e-25 120.2 121 55.4
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 1.4e-25 119.8 99 66.7
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 1.4e-25 119.8 99 64.6
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 1.4e-25 119.8 120 56.7
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 3.2e-25 118.6 120 56.7
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 3.2e-25 118.6 100 61.0
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 4.2e-25 118.2 122 54.1
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 7.2e-25 117.5 119 55.5
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 7.2e-25 117.5 119 50.4
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 7.2e-25 117.5 100 60.0
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 7.2e-25 117.5 120 52.5
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 9.3e-25 117.1 98 65.3
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 1.6e-24 116.3 95 58.9
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 6.1e-24 114.4 119 56.3
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 7.9e-24 114.0 101 60.4
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 1.0e-23 113.6 119 49.6
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 2.3e-23 112.5 120 55.8
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 3.0e-23 112.1 121 50.4
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 3.0e-23 112.1 96 60.4
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 3.0e-23 112.1 121 52.9
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 3.9e-23 111.7 113 52.2
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 3.9e-23 111.7 113 52.2
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 3.9e-23 111.7 120 55.0
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 5.1e-23 111.3 120 53.3
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 8.7e-23 110.5 98 56.1
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 2.5e-22 109.0 120 51.7
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 2.5e-22 109.0 119 50.4
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 7.4e-22 107.5 113 55.8
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 7.4e-22 107.5 121 51.2
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 1.3e-21 106.7 119 48.7
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 2.2e-21 105.9 119 50.4
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 3.7e-21 105.1 120 50.0
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 4.8e-21 104.8 119 47.9
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 8.2e-21 104.0 110 48.2
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 8.2e-21 104.0 122 48.4
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 8.2e-21 104.0 115 49.6
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 1.1e-20 103.6 94 55.3
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 1.1e-20 103.6 99 53.5
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 1.1e-20 103.6 85 63.5
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 1.4e-20 103.2 120 50.0
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 1.4e-20 103.2 95 56.8
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 1.4e-20 103.2 99 53.5
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 1.8e-20 102.8 119 47.1
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 9.0e-20 100.5 100 54.0
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 1.2e-19 100.1 115 47.0
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 1.5e-19 99.8 117 46.2
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 1.5e-19 99.8 117 46.2
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 2.0e-19 99.4 115 47.0
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 4.5e-19 98.2 106 46.2
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 5.9e-19 97.8 119 47.1
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 1.0e-18 97.1 117 45.3
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 1.0e-18 97.1 119 46.2
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 1.0e-18 97.1 119 46.2
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 1.0e-18 97.1 102 52.9
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 1.0e-18 97.1 121 47.9
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 1.0e-18 97.1 119 45.4
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 1.7e-18 96.3 114 47.4
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 1.7e-18 96.3 99 45.5
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 5.0e-18 94.7 112 46.4
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 5.0e-18 94.7 112 46.4
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 8.5e-18 94.0 119 44.5
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 1.1e-17 93.6 119 43.7
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 1.4e-17 93.2 110 46.4
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 1.9e-17 92.8 111 46.8
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 1.9e-17 92.8 120 39.2
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 1.9e-17 92.8 86 54.7
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 3.2e-17 92.0 121 43.0
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 2.1e-16 89.4 98 51.0
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 2.1e-16 89.4 104 47.1
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 6.1e-16 87.8 120 42.5
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 6.1e-16 87.8 114 44.7
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 1.0e-15 87.0 120 39.2
MBI01_g01252_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 1.8e-15 86.3 96 47.9
MBI01_g01254_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.3e-15 85.9 96 47.9
MBI01_g01255_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 8.8e-15 84.0 96 46.9
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 8.8e-15 84.0 111 44.1
MBI01_g01253_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 1.1e-14 83.6 96 46.9
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 3.3e-14 82.0 76 52.6
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 1.3e-13 80.1 82 50.0
ATR0716G022 Amborella trichopoda HOM05D007246 ORTHO05D009066 3.7e-13 78.6 74 56.8
SGA_v2.0_scaffold52G18970 Striga asiatica HOM05D007246 ORTHO05D009066 5.3e-12 74.7 100 42.0
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 4.5e-11 71.6 117 37.6
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 5.9e-11 71.2 107 42.1
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 1.9e-09 66.2 85 42.4
SGA_v2.0_scaffold52G18969 Striga asiatica HOM05D007246 ORTHO05D009066 3.2e-09 65.5 103 36.9
FAN20G0163 Fragaria x ananassa HOM05D007246 ORTHO05D009066 4.2e-09 65.1 50 66.0
HPP92_002815 Vanilla planifolia HOM05D007246 ORTHO05D009066 7.2e-09 64.3 69 46.4
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 2.7e-08 62.4 75 45.3
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 2.7e-08 62.4 75 45.3
Os06g0149500 Oryza sativa ssp. japonica HOM05D007246 ORTHO05D009066 2.3e-07 59.3 86 38.4
SEGI_11751 Sequoiadendron giganteum HOM05D007246 ORTHO05D009066 1.1e-06 57.0 103 33.0
Lsat_1_v5_gn_4_16480 Lactuca sativa HOM05D007246 ORTHO05D009066 4.4e-06 55.1 35 65.7


User provided reference genes

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