Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010472.2 Cucumis melo HOM05D004094 ORTHO05D004601 0.0e+00 2544.6 1290 100.0
CsaV3_4G028330 Cucumis sativus L. HOM05D004094 ORTHO05D004601 0.0e+00 2085.1 1280 85.2
ClCG11G015680 Citrullus lanatus HOM05D004094 ORTHO05D004601 0.0e+00 1777.7 1286 74.3
Sed0014690 Sechium edule HOM05D004094 ORTHO05D004601 0.0e+00 1488.4 1206 68.0
Sed0015071 Sechium edule HOM05D004094 ORTHO05D004601 0.0e+00 1235.3 1299 56.8
Cfa016008 Carpinus fangiana HOM05D004094 ORTHO05D004601 9.5e-240 834.7 1279 44.6
QL09p035258 Quercus lobata HOM05D004094 ORTHO05D004601 4.9e-228 795.8 1290 42.9
Haze_00454 Corylus avellana HOM05D004094 ORTHO05D004601 4.1e-227 792.7 1387 41.3
Thecc.08G123800 Theobroma cacao HOM05D004094 ORTHO05D004601 9.6e-216 755.0 1269 41.4
CiPaw.05G222800 Carya illinoinensis HOM05D004094 ORTHO05D004601 2.0e-213 747.3 1190 42.6
Gorai.010G049800 Gossypium raimondii HOM05D004094 ORTHO05D004601 4.9e-204 716.1 1287 39.7
Gohir.D06G044700 Gossypium hirsutum HOM05D004094 ORTHO05D004601 1.6e-199 701.0 1294 39.0
Gohir.A06G043800 Gossypium hirsutum HOM05D004094 ORTHO05D004601 1.2e-197 694.9 1288 39.1
MD15G1351000 Malus domestica HOM05D004094 ORTHO05D004601 2.5e-192 677.2 1302 38.2
Prupe.1G499900 Prunus persica HOM05D004094 ORTHO05D004601 3.3e-192 676.8 1245 39.0
Potri.005G177000 Populus trichocarpa HOM05D004094 ORTHO05D004601 5.9e-189 666.0 1267 37.3
Ciclev10000067m.g Citrus clementina HOM05D004094 ORTHO05D004601 1.9e-187 661.0 1261 37.8
Ca_15191_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 4.2e-187 659.8 1291 38.0
TAR625G0515 Trochodendron aralioides HOM05D004094 ORTHO05D004601 3.5e-186 656.8 1179 38.2
Dinv07237 Davidia involucrata HOM05D004094 ORTHO05D004601 3.9e-185 653.3 1142 38.9
Sabra02G0066100 Salix brachista HOM05D004094 ORTHO05D004601 9.0e-182 642.1 1240 37.4
Potri.002G084700 Populus trichocarpa HOM05D004094 ORTHO05D004601 3.8e-180 636.7 1290 36.3
CSS0004297 Camellia sinensis var. sinensis HOM05D004094 ORTHO05D004601 1.9e-179 634.4 1202 38.1
PGR042G1714 Punica granatum HOM05D004094 ORTHO05D004601 3.2e-179 633.6 1268 36.6
Sabra05G0133600 Salix brachista HOM05D004094 ORTHO05D004601 1.2e-178 631.7 1333 36.2
FvH4_2g26770 Fragaria vesca HOM05D004094 ORTHO05D004601 3.6e-178 630.2 1310 37.0
FAN24G0267 Fragaria x ananassa HOM05D004094 ORTHO05D004601 2.3e-177 627.5 1304 37.0
RcHm_v2.0_Chr6g0295641 Rosa chinensis HOM05D004094 ORTHO05D004601 5.7e-176 622.9 1285 37.2
FAN20G0223 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.7e-175 621.3 1278 37.2
Medtr3g072400 Medicago truncatula HOM05D004094 ORTHO05D004601 3.7e-175 620.2 1295 37.2
TWI12G0492 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 3.7e-175 620.2 1279 35.6
FAN15G0810 Fragaria x ananassa HOM05D004094 ORTHO05D004601 8.2e-175 619.0 1277 37.2
Duzib093G2002 Durio zibethinus HOM05D004094 ORTHO05D004601 1.5e-173 614.8 1117 40.6
Lj1g0022360 Lotus japonicus HOM05D004094 ORTHO05D004601 3.6e-170 603.6 1209 37.3
TPR.G24027 Trifolium pratense HOM05D004094 ORTHO05D004601 4.7e-170 603.2 1310 36.6
CANSAT64G2400 Cannabis sativa HOM05D004094 ORTHO05D004601 1.1e-168 598.6 1208 36.4
Psat5g131960 Pisum sativum HOM05D004094 ORTHO05D004601 9.7e-168 595.5 1310 35.7
Rhsim06G0104600 Rhododendron simsii HOM05D004094 ORTHO05D004601 1.2e-165 588.6 1241 35.4
Glyma.06G112600 Glycine max HOM05D004094 ORTHO05D004601 3.5e-165 587.0 1301 36.2
Nitab4.5_0004044g0030 Nicotiana tabacum HOM05D004094 ORTHO05D004601 3.8e-164 583.6 1246 35.9
Manes.02G162400 Manihot esculenta HOM05D004094 ORTHO05D004601 8.5e-164 582.4 1317 34.2
GSVIVG01008880001 Vitis vinifera HOM05D004094 ORTHO05D004601 2.1e-162 577.8 947 41.7
Lalb_Chr23g0271001 Lupinus albus HOM05D004094 ORTHO05D004601 2.3e-161 574.3 1277 35.7
Glyma.04G250200 Glycine max HOM05D004094 ORTHO05D004601 3.0e-161 573.9 1317 36.0
arahy.Tifrunner.gnm1.ann1.1LZC07 Arachis hypogaea HOM05D004094 ORTHO05D004601 4.0e-161 573.5 1277 35.2
Nitab4.5_0000633g0220 Nicotiana tabacum HOM05D004094 ORTHO05D004601 1.4e-158 565.1 1294 34.6
Aqoxy6G00193 Aquilegia oxysepala HOM05D004094 ORTHO05D004601 9.1e-158 562.4 1213 35.9
arahy.Tifrunner.gnm1.ann1.WV2Q7U Arachis hypogaea HOM05D004094 ORTHO05D004601 1.0e-156 558.9 1292 35.2
Phvul.009G124500 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 2.9e-156 557.4 1283 34.6
Nn1g08759 Nelumbo nucifera HOM05D004094 ORTHO05D004601 7.2e-155 552.7 1295 34.7
vmacro12538 Vaccinium macrocarpon HOM05D004094 ORTHO05D004601 9.4e-155 552.4 1317 33.7
Lalb_Chr04g0253401 Lupinus albus HOM05D004094 ORTHO05D004601 1.2e-154 552.0 1232 35.5
Duzib041G0387 Durio zibethinus HOM05D004094 ORTHO05D004601 1.0e-153 548.9 1251 35.3
Cc00_g04280 Coffea canephora HOM05D004094 ORTHO05D004601 3.4e-152 543.9 1207 34.3
Ca_14821_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 9.1e-150 535.8 1222 34.7
Sopen06g020480 Solanum pennellii HOM05D004094 ORTHO05D004601 1.6e-149 535.0 1282 33.0
DCAR_014092 Daucus carota HOM05D004094 ORTHO05D004601 6.5e-148 529.6 1240 33.6
ECA234G0673 Erigeron canadensis HOM05D004094 ORTHO05D004601 3.2e-147 527.3 1357 32.6
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 2.7e-146 524.2 1271 33.8
Psat6g041960 Pisum sativum HOM05D004094 ORTHO05D004601 8.0e-146 522.7 1243 34.6
Lj1g0018898 Lotus japonicus HOM05D004094 ORTHO05D004601 3.0e-145 520.8 1264 33.9
Ca_12613_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 2.6e-144 517.7 1190 35.8
Cpa.g.sc36.56 Carica papaya HOM05D004094 ORTHO05D004601 1.3e-143 515.4 1197 34.6
SGA_v2.0_scaffold24G10467 Striga asiatica HOM05D004094 ORTHO05D004601 1.3e-143 515.4 1257 33.7
Migut.C01138 Erythranthe guttata HOM05D004094 ORTHO05D004601 6.3e-143 513.1 1280 33.5
MSTRG.1451 Avicennia marina HOM05D004094 ORTHO05D004601 5.4e-142 510.0 1278 33.8
PSO170G3655 Papaver somniferum HOM05D004094 ORTHO05D004601 1.2e-141 508.8 1348 32.4
Peaxi162Scf00051g00911 Petunia axillaris HOM05D004094 ORTHO05D004601 2.0e-141 508.1 1256 33.2
PSO782G4804 Papaver somniferum HOM05D004094 ORTHO05D004601 3.5e-141 507.3 1341 32.7
DCAR_017419 Daucus carota HOM05D004094 ORTHO05D004601 1.8e-137 495.0 1225 32.1
Sc23g0000720 Simmondsia chinensis HOM05D004094 ORTHO05D004601 6.8e-137 493.0 1496 31.5
Solyc06g060350.4 Solanum lycopersicum HOM05D004094 ORTHO05D004601 4.9e-135 486.9 1280 32.5
Medtr1g030410 Medicago truncatula HOM05D004094 ORTHO05D004601 4.1e-134 483.8 1249 34.3
Glyma.14G148700 Glycine max HOM05D004094 ORTHO05D004601 9.2e-134 482.6 1224 32.7
VMungo1309G1727 Vigna mungo HOM05D004094 ORTHO05D004601 2.0e-133 481.5 1322 32.5
TPR.G25784 Trifolium pratense HOM05D004094 ORTHO05D004601 3.0e-132 477.6 1180 34.1
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 1.1e-131 475.7 1291 32.4
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 8.0e-130 469.5 1291 32.8
Lsat_1_v5_gn_5_126560 Lactuca sativa HOM05D004094 ORTHO05D004601 8.9e-129 466.1 1198 33.2
HanXRQChr10g0304931 Helianthus annuus HOM05D004094 ORTHO05D004601 2.6e-128 464.5 1225 31.3
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 1.3e-127 462.2 1274 33.2
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 6.4e-127 459.9 1277 32.8
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 2.0e-125 454.9 1289 32.0
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 4.6e-125 453.8 1280 32.6
Sc01g0001180 Simmondsia chinensis HOM05D004094 ORTHO05D004601 1.9e-123 448.4 1516 29.1
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 3.6e-122 444.1 1268 32.5
FAN20G1705 Fragaria x ananassa HOM05D004094 ORTHO05D004601 5.2e-121 440.3 763 39.6
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 1.2e-120 439.1 1290 31.9
arahy.Tifrunner.gnm1.ann1.HK9WB5 Arachis hypogaea HOM05D004094 ORTHO05D004601 2.0e-120 438.3 1287 31.1
arahy.Tifrunner.gnm1.ann1.3295S8 Arachis hypogaea HOM05D004094 ORTHO05D004601 7.5e-120 436.4 1284 31.2
ATR0684G176 Amborella trichopoda HOM05D004094 ORTHO05D004601 2.2e-119 434.9 1271 31.9
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 1.6e-117 428.7 1272 32.5
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 3.5e-117 427.6 1272 32.5
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 3.9e-116 424.1 1272 31.9
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 4.0e-113 414.1 1256 32.1
SalBow7G0426 Salvia bowleyana HOM05D004094 ORTHO05D004601 8.9e-113 412.9 1281 31.0
Hund16854 Selenicereus undatus HOM05D004094 ORTHO05D004601 2.6e-112 411.4 1586 27.3
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 4.4e-112 410.6 1160 33.5
AUR62027887 Chenopodium quinoa HOM05D004094 ORTHO05D004601 5.2e-105 387.1 1693 25.9
Oeu047946.1 Olea europaea HOM05D004094 ORTHO05D004601 5.8e-104 383.6 1290 30.2
Actinidia02613 Actinidia chinensis HOM05D004094 ORTHO05D004601 4.9e-103 380.6 736 36.4
AUR62019047 Chenopodium quinoa HOM05D004094 ORTHO05D004601 4.2e-102 377.5 1721 25.7
unitig_26.g9911 Utricularia gibba HOM05D004094 ORTHO05D004601 1.0e-100 372.9 1262 29.2
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 1.9e-99 368.6 942 32.7
EL10Ac1g01050 Beta vulgaris HOM05D004094 ORTHO05D004601 1.1e-97 362.8 1084 30.9
HPP92_002183 Vanilla planifolia HOM05D004094 ORTHO05D004601 1.7e-95 355.5 1292 28.8
Psat1g217360 Pisum sativum HOM05D004094 ORTHO05D004601 1.9e-94 352.1 536 41.6
Phvul.008G163600 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 3.2e-94 351.3 969 32.0
BcaC03g15753 Brassica carinata HOM05D004094 ORTHO05D004601 3.9e-92 344.4 1272 29.5
Hma1.2p1_0186F.1_g081720 Hydrangea macrophylla HOM05D004094 ORTHO05D004601 1.5e-91 342.4 429 45.9
COL.COLO4_35941 Corchorus olitorius HOM05D004094 ORTHO05D004601 1.6e-82 312.4 707 35.2
Os03g0262300 Oryza sativa ssp. japonica HOM05D004094 ORTHO05D004601 6.0e-77 293.9 1207 28.0
Zm00001eb398150 Zea mays HOM05D004094 ORTHO05D004601 3.0e-76 291.6 1182 27.3
FAN27G0677 Fragaria x ananassa HOM05D004094 ORTHO05D004601 2.0e-59 235.7 595 32.9
Eucgr.F03782 Eucalyptus grandis HOM05D004094 ORTHO05D004601 2.2e-58 232.3 570 32.8
TWI36G0013 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 3.3e-51 208.4 427 35.6
COL.COLO4_35940 Corchorus olitorius HOM05D004094 ORTHO05D004601 4.8e-50 204.5 413 38.3
VMungo0647G1825 Vigna mungo HOM05D004094 ORTHO05D004601 1.8e-49 202.6 663 29.6
VMungo0647G0510 Vigna mungo HOM05D004094 ORTHO05D004601 9.1e-49 200.3 576 30.9
Psat3g082880 Pisum sativum HOM05D004094 ORTHO05D004601 1.8e-44 186.0 439 34.2
TWI36G0382 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 2.2e-39 169.1 495 31.1
Actinidia23072 Actinidia chinensis HOM05D004094 ORTHO05D004601 5.0e-39 167.9 479 31.9
C02p34910 Brassica napus HOM05D004094 ORTHO05D004601 2.3e-36 159.1 898 23.6
SHI23046 Sapria himalayana HOM05D004094 ORTHO05D004601 1.2e-35 156.8 307 39.1
Mapoly0007s0100 Marchantia polymorpha HOM05D004094 ORTHO05D004601 5.7e-35 154.5 618 27.0
Lj7A339G40 Lonicera japonica HOM05D004094 ORTHO05D004601 7.5e-35 154.1 410 34.1
Pp3c12_8350 Physcomitrium patens HOM05D004094 ORTHO05D004601 2.8e-34 152.1 370 33.2
PGSC0003DMG400017557 Solanum tuberosum HOM05D004094 ORTHO05D004601 1.8e-33 149.4 252 37.3
AagrBONN_evm.TU.Sc2ySwM_368.377 Anthoceros agrestis HOM05D004094 ORTHO05D004601 7.0e-33 147.5 799 24.5
CDE06G1261 Ceratophyllum demersum HOM05D004094 ORTHO05D004601 2.0e-32 146.0 638 29.0
MBI03_g47843_MAGBIO Magnolia biondii HOM05D004094 ORTHO05D004601 3.5e-32 145.2 475 31.6
CDE06G0603 Ceratophyllum demersum HOM05D001730 ORTHO05D005730 4.5e-32 144.8 594 26.9
GSVIVG01008881001 Vitis vinifera HOM05D004094 ORTHO05D004601 2.3e-31 142.5 361 32.4
Pp3c13_19570 Physcomitrium patens HOM05D004094 ORTHO05D004601 6.5e-31 141.0 732 27.2
Dinv27324 Davidia involucrata HOM05D004094 ORTHO05D004601 7.2e-30 137.5 188 44.7
VMungo1383G1238 Vigna mungo HOM05D004094 ORTHO05D004601 3.0e-28 132.1 412 30.6
BraA02t07168Z Brassica rapa HOM05D004094 ORTHO05D004601 1.5e-19 103.2 150 41.3
SEGI_20546 Sequoiadendron giganteum HOM05D004094 ORTHO05D004601 4.4e-19 101.7 325 27.4
CBR_g29736 Chara braunii HOM05D004094 ORTHO05D004601 2.9e-18 99.0 107 43.0
Actinidia02614 Actinidia chinensis HOM05D004094 ORTHO05D004601 3.7e-18 98.6 263 33.5
Lj7A339T40 Lonicera japonica HOM05D004094 ORTHO05D004601 4.1e-17 95.1 142 40.8
TPR.G11472 Trifolium pratense HOM05D004094 ORTHO05D004601 4.1e-17 95.1 102 48.0
Duzib093G1173 Durio zibethinus HOM05D004094 ORTHO05D004601 1.2e-16 93.6 161 37.9
SHI23041 Sapria himalayana HOM05D004094 ORTHO05D004601 1.7e-15 89.7 402 27.9
BolC2t09507H Brassica oleracea HOM05D004094 ORTHO05D004601 9.5e-14 84.0 514 25.1
TWI77G0135 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 4.7e-13 81.6 100 47.0
BolC2t09506H Brassica oleracea HOM05D004094 ORTHO05D004601 1.3e-10 73.6 422 23.7
Cfa014854 Carpinus fangiana HOM05D000997 ORTHO05D004601 2.4e-09 69.3 68 52.9
TPR.G23323 Trifolium pratense HOM05D004094 ORTHO05D004601 5.4e-09 68.2 59 54.2
Cfa003011 Carpinus fangiana HOM05D004094 ORTHO05D004601 1.6e-08 66.6 50 56.0
Cfa023858 Carpinus fangiana HOM05D004094 ORTHO05D004601 1.6e-08 66.6 381 25.2
Cfa008660 Carpinus fangiana HOM05D004094 ORTHO05D004601 2.0e-08 66.2 50 56.0
TPR.G3495 Trifolium pratense HOM05D004094 ORTHO05D004601 1.0e-07 63.9 59 52.5
SHI23045 Sapria himalayana HOM05D004094 ORTHO05D004601 3.9e-07 62.0 41 58.5


User provided reference genes

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