Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010459.2 Cucumis melo HOM05D003443 ORTHO05D009887 7.7e-247 856.7 424 100.0
CsaV3_4G028430 Cucumis sativus L. HOM05D003443 ORTHO05D009887 1.9e-205 719.2 424 86.8
ClCG11G015590 Citrullus lanatus HOM05D003443 ORTHO05D009887 4.9e-201 704.5 424 83.7
Sed0010337 Sechium edule HOM05D003443 ORTHO05D009887 1.9e-181 639.4 416 77.2
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 3.7e-132 475.7 419 60.6
QL09p035320 Quercus lobata HOM05D003443 ORTHO05D009887 1.3e-129 467.2 437 56.5
Manes.02G161000 Manihot esculenta HOM05D003443 ORTHO05D009887 5.2e-126 455.3 425 55.5
Atru.chr13.1406 Acer truncatum HOM05D003443 ORTHO05D009887 8.8e-126 454.5 433 56.1
TWI56G0082 Tripterygium wilfordii HOM05D003443 ORTHO05D009887 1.1e-125 454.1 422 56.4
GSVIVG01008903001 Vitis vinifera HOM05D003443 ORTHO05D009887 1.4e-123 447.2 432 53.5
TAR628G0851 Trochodendron aralioides HOM05D003443 ORTHO05D009887 6.5e-121 438.3 432 53.0
Prupe.1G501800 Prunus persica HOM05D003443 ORTHO05D009887 5.5e-120 435.3 440 53.0
Thecc.08G121100 Theobroma cacao HOM05D003443 ORTHO05D009887 5.2e-118 428.7 429 53.1
Nn5g28161 Nelumbo nucifera HOM05D003443 ORTHO05D009887 2.2e-116 423.3 431 51.5
Gohir.A05G233300 Gossypium hirsutum HOM05D003443 ORTHO05D009887 1.8e-115 420.2 430 51.4
CANSAT25G3703 Cannabis sativa HOM05D003443 ORTHO05D009887 4.1e-115 419.1 432 51.4
MD08G1168100 Malus domestica HOM05D003443 ORTHO05D009887 9.1e-115 417.9 439 51.5
QL09p036517 Quercus lobata HOM05D003443 ORTHO05D009887 2.7e-114 416.4 408 54.7
Gorai.009G244000 Gossypium raimondii HOM05D003443 ORTHO05D009887 2.2e-113 413.3 430 50.9
RhsimUnG0094800 Rhododendron simsii HOM05D003443 ORTHO05D009887 3.8e-113 412.5 461 48.2
Eucgr.F03767 Eucalyptus grandis HOM05D003443 ORTHO05D009887 5.0e-113 412.1 430 51.9
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 1.2e-111 407.5 433 51.5
RcHm_v2.0_Chr6g0295331 Rosa chinensis HOM05D003443 ORTHO05D009887 1.2e-111 407.5 436 51.6
FvH4_2g26511 Fragaria vesca HOM05D003443 ORTHO05D009887 4.0e-110 402.5 435 50.6
Sabra05G0132100 Salix brachista HOM05D003443 ORTHO05D009887 1.2e-109 401.0 441 49.9
Psat2g078480 Pisum sativum HOM05D003443 ORTHO05D009887 9.8e-109 397.9 434 49.5
VMungo0647G1328 Vigna mungo HOM05D003443 ORTHO05D009887 1.2e-106 391.0 434 49.3
Hund16841 Selenicereus undatus HOM05D003443 ORTHO05D009887 1.0e-105 387.9 427 50.4
DCAR_003542 Daucus carota HOM05D003443 ORTHO05D009887 2.3e-105 386.7 414 48.6
Lj1g0008620 Lotus japonicus HOM05D003443 ORTHO05D009887 3.3e-104 382.9 429 48.0
Lalb_Chr10g0101921 Lupinus albus HOM05D003443 ORTHO05D009887 1.6e-103 380.6 434 47.5
Medtr5g059070 Medicago truncatula HOM05D003443 ORTHO05D009887 8.0e-103 378.3 434 47.2
arahy.Tifrunner.gnm1.ann1.5F0RSX Arachis hypogaea HOM05D003443 ORTHO05D009887 2.3e-102 376.7 437 46.7
Ca_03725_v3 Cicer arietinum L. HOM05D003443 ORTHO05D009887 1.5e-101 374.0 435 48.0
arahy.Tifrunner.gnm1.ann1.JR3K98 Arachis hypogaea HOM05D003443 ORTHO05D009887 2.0e-101 373.6 437 46.5
Migut.C01151 Erythranthe guttata HOM05D003443 ORTHO05D009887 3.4e-101 372.9 412 45.9
HanXRQChr04g0111631 Helianthus annuus HOM05D003443 ORTHO05D009887 3.4e-101 372.9 414 49.3
Lsat_1_v5_gn_1_8320 Lactuca sativa HOM05D003443 ORTHO05D009887 2.4e-99 366.7 413 48.7
Phvul.008G165600 Phaseolus vulgaris HOM05D003443 ORTHO05D009887 2.4e-99 366.7 436 47.9
CAN.G48.26 Capsicum annuum HOM05D003443 ORTHO05D009887 1.5e-96 357.5 424 46.2
Haze_00482 Corylus avellana HOM05D003443 ORTHO05D009887 4.3e-96 355.9 413 48.7
Nitab4.5_0002816g0090 Nicotiana tabacum HOM05D003443 ORTHO05D009887 2.8e-95 353.2 434 45.9
PGSC0003DMG400014817 Solanum tuberosum HOM05D003443 ORTHO05D009887 4.7e-95 352.4 435 46.0
MSTRG.1462 Avicennia marina HOM05D003443 ORTHO05D009887 6.1e-95 352.1 415 45.3
FAN27G2831 Fragaria x ananassa HOM05D003443 ORTHO05D009887 1.3e-92 344.4 400 47.5
Solyc03g093210.3 Solanum lycopersicum HOM05D003443 ORTHO05D009887 1.7e-92 344.0 459 43.1
SalBow7G0745 Salvia bowleyana HOM05D003443 ORTHO05D009887 2.2e-92 343.6 413 43.3
SalBow7G1610 Salvia bowleyana HOM05D003443 ORTHO05D009887 2.4e-91 340.1 413 43.6
Lj7C333G3 Lonicera japonica HOM05D003443 ORTHO05D009887 1.2e-90 337.8 362 49.2
ECA247G0446 Erigeron canadensis HOM05D003443 ORTHO05D009887 6.0e-90 335.5 384 47.4
Duzib093G0763 Durio zibethinus HOM05D003443 ORTHO05D009887 3.3e-88 329.7 364 50.0
Nitab4.5_0010023g0010 Nicotiana tabacum HOM05D003443 ORTHO05D009887 7.3e-88 328.6 508 40.2
Glyma.14G162900 Glycine max HOM05D003443 ORTHO05D009887 2.8e-87 326.6 373 48.0
Sc01g0001370 Simmondsia chinensis HOM05D003443 ORTHO05D009887 6.2e-87 325.5 370 47.8
TPR.G8502 Trifolium pratense HOM05D003443 ORTHO05D009887 8.9e-86 321.6 402 44.5
EL10Ac1g00011 Beta vulgaris HOM05D003443 ORTHO05D009887 1.7e-81 307.4 437 44.2
SGA_v2.0_scaffold52G18985 Striga asiatica HOM05D003443 ORTHO05D009887 3.9e-81 306.2 419 42.2
Actinidia25684 Actinidia chinensis HOM05D003443 ORTHO05D009887 1.6e-79 300.8 317 49.5
AUR62004719 Chenopodium quinoa HOM05D003443 ORTHO05D009887 2.9e-76 290.0 384 42.7
Medtr5g459020 Medicago truncatula HOM05D003443 ORTHO05D009887 1.2e-74 284.6 344 45.1
vmacro00815 Vaccinium macrocarpon HOM05D003443 ORTHO05D009887 1.6e-71 274.2 454 39.0
Oeu050896.1 Olea europaea HOM05D003443 ORTHO05D009887 2.4e-70 270.4 441 39.2
AUR62023638 Chenopodium quinoa HOM05D003443 ORTHO05D009887 4.0e-70 269.6 378 42.3
MBI06_g02575_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 3.4e-69 266.5 427 40.0
Peaxi162Scf00241g00037 Petunia axillaris HOM05D003443 ORTHO05D009887 3.0e-65 253.4 453 37.5
Aqoxy5G02443 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 7.6e-61 238.8 261 47.5
Potri.005G174900 Populus trichocarpa HOM05D003443 ORTHO05D009887 1.1e-59 235.0 427 36.1
Sopen03g024010 Solanum pennellii HOM05D003443 ORTHO05D009887 1.2e-50 204.9 332 41.0
MBI06_g35594_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 4.6e-50 203.0 229 45.9
Cc10_g11010 Coffea canephora HOM05D003443 ORTHO05D009887 1.8e-49 201.1 270 43.3
Actinidia29454 Actinidia chinensis HOM05D003443 ORTHO05D009887 2.1e-47 194.1 213 51.2
Gohir.D05G235701 Gossypium hirsutum HOM05D003443 ORTHO05D009887 8.1e-47 192.2 209 50.2
ATR0684G011 Amborella trichopoda HOM05D003443 ORTHO05D009887 4.5e-45 186.4 264 39.0
Cc10_g11020 Coffea canephora HOM05D003443 ORTHO05D009887 2.5e-43 180.6 173 48.6
MBI06_g44274_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 1.0e-33 148.7 317 33.1
Lj7E334T0 Lonicera japonica HOM05D003443 ORTHO05D009887 5.9e-29 132.9 86 65.1
Os04g0450500 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D009887 2.9e-28 130.6 242 35.1
Aqoxy5G02442 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 1.4e-22 111.7 157 42.0
COL.COLO4_12190 Corchorus olitorius HOM05D003443 ORTHO05D009887 3.4e-21 107.1 76 60.5
PGSC0003DMG400021471 Solanum tuberosum HOM05D003443 ORTHO05D009887 4.5e-21 106.7 93 53.8
MBI06_g35595_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 5.0e-20 103.2 128 45.3
SEGI_24688 Sequoiadendron giganteum HOM05D003443 ORTHO05D009887 2.3e-09 67.8 181 29.8
Hma1.2p1_0248F.1_g102080 Hydrangea macrophylla HOM05D003443 ORTHO05D009887 1.1e-08 65.5 37 70.3
Migut.K01194 Erythranthe guttata HOM05D003443 ORTHO05D009887 1.5e-08 65.1 201 26.4
Zm00001eb081310 Zea mays HOM05D003443 ORTHO05D009887 8.2e-07 59.3 123 29.3


User provided reference genes

Program Settings