Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 8.2e-171 603.6 295 100.0
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 1.3e-168 596.3 295 98.3
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 1.0e-157 560.1 295 93.6
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 5.9e-145 517.7 295 85.4
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.0e-141 506.9 295 84.1
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 1.2e-121 440.3 295 75.3
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 2.7e-121 439.1 289 74.4
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 1.9e-119 433.0 285 73.3
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.4e-117 426.8 294 70.1
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 4.0e-117 425.2 293 71.0
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 6.8e-117 424.5 293 71.0
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 7.5e-116 421.0 296 69.9
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.7e-115 419.9 266 76.7
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 2.2e-115 419.5 288 70.5
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.8e-115 419.1 296 69.6
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 3.7e-115 418.7 286 71.7
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 4.9e-115 418.3 293 71.0
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 3.1e-114 415.6 297 70.0
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 3.1e-114 415.6 297 70.4
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 7.0e-114 414.5 257 76.7
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 7.0e-114 414.5 284 71.1
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 9.2e-114 414.1 294 70.1
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 1.6e-113 413.3 296 70.3
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 2.7e-113 412.5 291 68.7
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 3.5e-113 412.1 280 72.5
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 1.0e-112 410.6 286 71.0
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 1.7e-112 409.8 291 69.8
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.9e-112 409.1 295 69.2
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 5.0e-112 408.3 269 73.6
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 6.6e-112 407.9 291 68.7
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 8.6e-112 407.5 297 69.0
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.1e-111 407.1 257 75.9
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 5.6e-111 404.8 291 69.8
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 9.5e-111 404.1 299 68.9
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.6e-110 403.3 259 75.3
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 1.6e-110 403.3 284 70.4
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.8e-110 402.5 265 75.1
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 2.8e-110 402.5 297 67.3
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 4.7e-110 401.7 291 68.0
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 6.1e-110 401.4 281 70.5
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.1e-110 401.4 269 73.6
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 6.1e-110 401.4 286 68.5
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 1.0e-109 400.6 279 70.6
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.4e-109 400.2 271 72.0
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.8e-109 399.8 291 68.4
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.8e-109 399.8 291 68.4
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 4.0e-109 398.7 283 70.3
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.2e-109 398.3 269 72.9
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.8e-109 397.9 264 73.1
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 6.8e-109 397.9 291 68.7
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 8.9e-109 397.5 302 66.9
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 1.2e-108 397.1 282 68.4
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 2.6e-108 396.0 302 67.2
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 3.4e-108 395.6 297 67.3
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 4.4e-108 395.2 285 67.0
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 4.4e-108 395.2 286 69.2
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 5.8e-108 394.8 297 66.0
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.3e-107 393.7 282 68.1
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 2.2e-107 392.9 295 67.8
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 1.4e-106 390.2 294 67.0
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 1.9e-106 389.8 275 68.0
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 4.1e-106 388.7 298 66.8
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 5.4e-106 388.3 296 63.5
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 9.2e-106 387.5 300 65.3
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 9.2e-106 387.5 292 65.8
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 2.7e-105 386.0 292 65.8
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.3e-104 382.9 271 69.4
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 3.9e-104 382.1 291 65.3
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 5.0e-104 381.7 246 74.8
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 5.6e-103 378.3 281 64.4
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 7.3e-103 377.9 268 69.4
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 3.6e-102 375.6 289 63.7
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 3.6e-102 375.6 294 65.6
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 6.2e-102 374.8 289 65.7
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 1.1e-101 374.0 292 63.7
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.8e-101 373.2 293 62.5
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 6.8e-101 371.3 236 76.3
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 1.2e-100 370.5 289 66.8
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 9.8e-100 367.5 227 77.1
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 8.3e-99 364.4 296 62.5
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 2.7e-97 359.4 265 66.0
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 5.1e-96 355.1 222 77.9
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 3.3e-95 352.4 265 65.3
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.6e-94 349.0 264 67.0
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 2.6e-92 342.8 291 57.0
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 3.4e-92 342.4 334 55.1
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.7e-91 340.1 283 59.4
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 2.9e-91 339.3 285 62.1
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.7e-91 339.0 207 78.3
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 9.2e-90 334.3 374 48.4
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.6e-89 333.6 290 58.6
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.7e-88 330.1 230 71.7
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 5.1e-88 328.6 282 55.3
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 6.6e-88 328.2 235 68.5
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 9.5e-87 324.3 229 69.9
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 3.8e-83 312.4 260 56.2
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 4.2e-82 308.9 272 58.5
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.3e-80 303.1 213 68.5
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 3.0e-80 302.8 289 55.0
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 3.9e-80 302.4 272 57.7
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 6.6e-80 301.6 209 71.3
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 1.5e-79 300.4 273 56.4
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 9.6e-79 297.7 256 57.0
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 9.6e-79 297.7 256 57.0
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 2.1e-78 296.6 276 56.5
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 2.1e-78 296.6 262 57.6
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 2.1e-78 296.6 272 55.5
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 2.8e-78 296.2 276 55.1
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 3.6e-78 295.8 245 60.4
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.1e-77 294.3 272 55.1
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.1e-77 294.3 272 55.1
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.1e-77 294.3 272 55.1
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.5e-71 273.9 245 55.5
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 2.8e-70 269.6 245 59.2
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 1.1e-69 267.7 274 50.7
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 2.0e-68 263.5 218 59.6
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.9e-66 256.9 243 52.7
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 8.7e-64 248.1 212 58.0
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 3.4e-60 236.1 274 47.4
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 7.9e-57 224.9 200 54.5
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 1.3e-56 224.2 238 45.8
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 2.6e-52 209.9 155 65.8
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 2.9e-51 206.5 234 45.7
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 6.1e-49 198.7 183 60.7
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 2.5e-42 176.8 121 66.9
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 3.1e-37 159.8 284 34.2
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 4.2e-34 149.4 131 56.5
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.6e-31 140.2 149 54.4
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 3.5e-28 129.8 218 35.8
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 1.1e-21 108.2 179 37.4
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 2.6e-20 103.6 173 35.8
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 7.2e-18 95.5 77 58.4
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 5.2e-16 89.4 108 47.2
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 4.4e-15 86.3 58 63.8
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 2.2e-14 84.0 48 83.3
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 7.0e-13 79.0 79 51.9
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 2.2e-11 73.9 43 72.1
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 1.1e-10 71.6 245 25.7
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 5.2e-08 62.8 99 40.4


User provided reference genes

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