Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 9.5e-43 176.4 87 100.0
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.7e-36 155.6 87 88.5
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.9e-30 135.6 86 74.4
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 5.4e-30 134.0 86 75.6
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 5.1e-28 127.5 87 71.3
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.1e-27 126.3 75 77.3
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 3.3e-27 124.8 86 69.8
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.4e-24 114.8 81 66.7
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.4e-24 114.8 81 66.7
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 3.4e-24 114.8 76 72.4
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.4e-24 114.4 86 66.3
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.4e-24 114.4 86 66.3
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 9.9e-24 113.2 86 65.1
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 1.3e-23 112.8 74 71.6
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.7e-23 112.5 74 71.6
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 3.7e-23 111.3 72 69.4
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.9e-22 109.0 87 62.1
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 2.4e-22 108.6 66 75.8
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 2.4e-22 108.6 73 71.2
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.2e-22 108.2 68 72.1
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 4.1e-22 107.8 68 73.5
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 4.1e-22 107.8 75 69.3
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 4.1e-22 107.8 81 65.4
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.2e-21 106.3 68 73.5
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.2e-21 106.3 72 68.1
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 2.7e-21 105.1 70 68.6
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 6.0e-21 104.0 67 71.6
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 7.8e-21 103.6 66 71.2
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 1.0e-20 103.2 72 72.2
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 1.3e-20 102.8 73 68.5
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.7e-20 102.4 70 64.3
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 1.7e-20 102.4 81 65.4
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.3e-20 102.1 73 68.5
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 2.3e-20 102.1 72 65.3
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.0e-20 101.7 72 65.3
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 3.0e-20 101.7 86 62.8
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 5.1e-20 100.9 61 72.1
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 5.1e-20 100.9 86 61.6
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 6.6e-20 100.5 86 58.1
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 8.6e-20 100.1 84 61.9
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 8.6e-20 100.1 83 56.6
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.1e-19 99.8 73 64.4
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 2.5e-19 98.6 81 64.2
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 2.5e-19 98.6 81 64.2
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.5e-19 98.6 67 67.2
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 4.3e-19 97.8 83 61.4
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 7.3e-19 97.1 62 72.6
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 4.7e-18 94.4 67 62.7
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 4.7e-18 94.4 67 62.7
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 4.7e-18 94.4 81 56.8
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 6.2e-18 94.0 66 65.2
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 1.8e-17 92.4 85 54.1
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 4.0e-17 91.3 66 69.7
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 4.0e-17 91.3 66 69.7
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 5.2e-17 90.9 73 58.9
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 8.9e-17 90.1 81 58.0
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 8.9e-17 90.1 89 51.7
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.2e-16 89.7 82 57.3
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.2e-16 89.7 73 56.2
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 1.5e-16 89.4 81 51.9
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 4.4e-16 87.8 81 56.8
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 4.4e-16 87.8 81 56.8
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.7e-15 85.9 81 51.9
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.2e-15 85.5 81 54.3
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 2.2e-15 85.5 88 52.3
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 2.2e-15 85.5 73 58.9
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 4.9e-15 84.3 81 48.1
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 6.4e-15 84.0 76 59.2
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 6.4e-15 84.0 76 59.2
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 6.4e-15 84.0 76 59.2
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 6.4e-15 84.0 76 59.2
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 6.4e-15 84.0 76 59.2
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 8.4e-15 83.6 85 51.8
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 8.4e-15 83.6 76 55.3
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.1e-14 83.2 83 51.8
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.1e-14 83.2 81 53.1
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.9e-14 82.4 77 55.8
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 1.9e-14 82.4 81 50.6
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 1.9e-14 82.4 85 52.9
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 3.2e-14 81.6 81 48.1
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 4.2e-14 81.3 81 49.4
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 4.2e-14 81.3 85 51.8
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 4.2e-14 81.3 81 50.6
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 5.4e-14 80.9 82 50.0
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 5.4e-14 80.9 81 48.1
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 5.4e-14 80.9 81 49.4
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 7.1e-14 80.5 76 57.9
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 7.1e-14 80.5 82 47.6
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 9.2e-14 80.1 81 49.4
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.2e-13 79.7 80 51.2
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.2e-13 79.7 81 43.2
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.6e-13 79.3 76 57.9
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 1.6e-13 79.3 81 46.9
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 2.1e-13 79.0 76 57.9
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 2.1e-13 79.0 76 57.9
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.1e-13 79.0 69 58.0
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 2.1e-13 79.0 67 55.2
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 2.1e-13 79.0 81 49.4
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 2.7e-13 78.6 71 54.9
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 3.5e-13 78.2 85 49.4
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 3.5e-13 78.2 76 57.9
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 4.6e-13 77.8 76 56.6
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 4.6e-13 77.8 76 56.6
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 4.6e-13 77.8 76 56.6
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 4.6e-13 77.8 79 51.9
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 6.0e-13 77.4 79 50.6
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 6.0e-13 77.4 79 50.6
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 6.0e-13 77.4 79 50.6
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 6.0e-13 77.4 79 50.6
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 6.0e-13 77.4 81 49.4
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 7.8e-13 77.0 81 48.1
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 7.8e-13 77.0 85 49.4
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 7.8e-13 77.0 81 49.4
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.0e-12 76.6 82 47.6
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 1.0e-12 76.6 76 56.6
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 1.0e-12 76.6 79 49.4
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-12 76.6 82 47.6
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-12 76.6 82 47.6
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-12 76.6 76 56.6
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.0e-12 76.6 82 47.6
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 1.0e-12 76.6 76 56.6
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 1.0e-12 76.6 81 49.4
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.0e-12 76.6 81 46.9
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 1.0e-12 76.6 82 43.9
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 1.3e-12 76.3 76 56.6
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 1.3e-12 76.3 76 56.6
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.3e-12 76.3 81 49.4
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.3e-12 76.3 70 55.7
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 1.3e-12 76.3 82 50.0
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-12 75.9 76 56.6
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.7e-12 75.9 81 44.4
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.7e-12 75.9 76 55.3
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.7e-12 75.9 79 49.4
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.3e-12 75.5 82 46.3
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 2.3e-12 75.5 82 46.3
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 2.3e-12 75.5 79 48.1
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 2.3e-12 75.5 85 48.2
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 2.3e-12 75.5 85 48.2
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.3e-12 75.5 48 75.0
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 3.0e-12 75.1 79 49.4
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 3.9e-12 74.7 83 48.2
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 3.9e-12 74.7 83 48.2
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 3.9e-12 74.7 73 49.3
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 3.9e-12 74.7 76 55.3
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 3.9e-12 74.7 81 53.1
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 5.1e-12 74.3 81 44.4
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 5.1e-12 74.3 81 42.0
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 5.1e-12 74.3 81 44.4
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 6.6e-12 73.9 67 53.7
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 8.7e-12 73.6 80 51.2
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 8.7e-12 73.6 82 46.3
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 8.7e-12 73.6 74 52.7
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 8.7e-12 73.6 69 53.6
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 8.7e-12 73.6 70 54.3
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 8.7e-12 73.6 70 54.3
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 1.1e-11 73.2 76 53.9
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.1e-11 73.2 81 45.7
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.1e-11 73.2 76 52.6
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.1e-11 73.2 81 45.7
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 1.1e-11 73.2 81 44.4
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.5e-11 72.8 81 44.4
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.5e-11 72.8 81 46.9
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 1.5e-11 72.8 81 45.7
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.5e-11 72.8 81 43.2
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 2.5e-11 72.0 48 70.8
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 5.6e-11 70.9 81 44.4
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 7.3e-11 70.5 69 50.7
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.3e-10 69.7 81 43.2
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 1.3e-10 69.7 81 43.2
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 3.6e-10 68.2 81 43.2
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 6.2e-10 67.4 62 51.6
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 8.1e-10 67.0 81 38.3
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 1.4e-09 66.2 81 42.0
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 1.8e-09 65.9 76 46.1
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 3.1e-09 65.1 65 50.8
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 6.9e-09 63.9 84 41.7
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 7.6e-08 60.5 64 48.4
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 8.4e-07 57.0 78 41.0
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 1.1e-06 56.6 78 41.0
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.2e-06 54.7 46 52.2


User provided reference genes

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