Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 1.4e-119 433.0 218 100.0
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 7.3e-84 314.3 167 96.4
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 1.2e-81 307.0 168 94.0
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 5.2e-74 281.6 169 87.6
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 9.9e-57 224.2 176 69.9
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 2.2e-56 223.0 174 69.5
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 6.4e-56 221.5 176 71.0
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 2.4e-55 219.5 175 66.9
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 3.5e-54 215.7 174 69.5
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 4.6e-54 215.3 175 69.7
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 1.3e-53 213.8 172 71.5
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 1.8e-53 213.4 170 69.4
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 3.0e-53 212.6 172 66.9
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 8.7e-53 211.1 176 67.0
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 2.5e-52 209.5 176 65.3
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 4.3e-52 208.8 173 67.6
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 4.3e-52 208.8 175 69.1
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 5.6e-52 208.4 174 66.1
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 1.3e-51 207.2 176 66.5
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 2.1e-51 206.5 175 65.7
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 2.8e-51 206.1 173 68.2
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 3.7e-51 205.7 172 67.4
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 6.2e-51 204.9 176 65.9
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.2e-51 204.9 175 66.9
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 6.2e-51 204.9 175 66.9
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 1.8e-50 203.4 176 65.3
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 5.3e-50 201.8 176 64.2
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 9.0e-50 201.1 175 65.7
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 1.2e-49 200.7 170 66.5
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 2.0e-49 199.9 174 64.9
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.0e-49 199.9 175 65.7
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 3.4e-49 199.1 176 65.3
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 4.5e-49 198.7 175 66.3
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 4.5e-49 198.7 170 66.5
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.8e-49 198.4 175 65.1
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 5.8e-49 198.4 175 65.1
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 5.8e-49 198.4 173 65.3
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 1.0e-48 197.6 168 64.9
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 1.3e-48 197.2 168 68.5
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 1.3e-48 197.2 175 61.7
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 2.2e-48 196.4 172 64.5
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 2.2e-48 196.4 176 64.2
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.2e-48 196.4 144 69.4
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 2.9e-48 196.1 174 61.5
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 2.9e-48 196.1 180 63.9
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 4.9e-48 195.3 173 64.7
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 6.5e-48 194.9 168 64.9
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 8.4e-48 194.5 172 63.4
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 8.4e-48 194.5 171 63.2
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 8.4e-48 194.5 175 61.1
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 1.9e-47 193.4 175 62.9
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 2.5e-47 193.0 169 66.9
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 3.2e-47 192.6 168 64.3
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 3.2e-47 192.6 169 66.3
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 3.2e-47 192.6 147 71.4
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 3.2e-47 192.6 164 67.1
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 4.2e-47 192.2 184 59.8
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.2e-47 192.2 169 66.9
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 7.1e-47 191.4 168 64.3
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 7.1e-47 191.4 168 66.1
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 9.3e-47 191.0 171 63.7
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 9.3e-47 191.0 176 61.9
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 9.3e-47 191.0 176 63.6
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 1.2e-46 190.7 174 62.1
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 1.6e-46 190.3 119 82.4
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 3.5e-46 189.1 155 67.7
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 3.5e-46 189.1 125 78.4
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 6.0e-46 188.3 160 65.6
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 7.9e-46 188.0 172 63.4
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 7.9e-46 188.0 169 63.3
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 7.9e-46 188.0 177 61.0
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.3e-45 187.2 177 63.3
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.3e-45 187.2 174 63.2
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.3e-45 186.4 172 62.2
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 3.0e-45 186.0 174 63.2
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.9e-45 185.7 173 61.3
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 3.9e-45 185.7 162 63.6
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 8.7e-45 184.5 168 64.9
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.5e-44 183.7 169 62.7
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.5e-44 183.7 120 81.7
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 4.3e-44 182.2 163 62.6
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 4.3e-44 182.2 131 75.6
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 5.7e-44 181.8 175 60.6
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 7.4e-44 181.4 172 59.9
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 7.4e-44 181.4 172 59.3
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 7.4e-44 181.4 178 62.4
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 7.4e-44 181.4 169 60.4
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 9.6e-44 181.0 172 59.3
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 2.1e-43 179.9 121 76.0
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 6.3e-43 178.3 175 58.9
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 8.2e-43 177.9 122 75.4
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 1.1e-42 177.6 133 72.2
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 1.4e-42 177.2 172 58.1
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.8e-42 176.8 124 74.2
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.8e-42 176.8 142 66.9
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 3.1e-42 176.0 145 67.6
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 3.1e-42 176.0 144 69.4
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 4.1e-42 175.6 120 76.7
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 4.1e-42 175.6 124 76.6
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 4.1e-42 175.6 124 76.6
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 4.1e-42 175.6 124 76.6
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 4.1e-42 175.6 124 76.6
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 4.1e-42 175.6 173 60.7
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 4.1e-42 175.6 175 59.4
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 5.3e-42 175.3 125 72.8
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 6.9e-42 174.9 129 71.3
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 9.0e-42 174.5 142 66.9
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 9.0e-42 174.5 169 60.4
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 1.2e-41 174.1 170 63.5
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 2.0e-41 173.3 129 72.1
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.6e-41 172.9 128 73.4
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 3.4e-41 172.6 171 60.2
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 4.5e-41 172.2 124 73.4
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 4.5e-41 172.2 138 69.6
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 7.6e-41 171.4 119 76.5
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.0e-40 171.0 130 71.5
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 1.0e-40 171.0 150 65.3
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 1.3e-40 170.6 123 73.2
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 1.7e-40 170.2 127 72.4
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 2.9e-40 169.5 123 73.2
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 3.8e-40 169.1 168 61.3
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 2.5e-39 166.4 130 70.0
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 3.2e-39 166.0 166 60.8
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 7.2e-39 164.9 174 56.9
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 1.6e-38 163.7 150 64.0
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 4.6e-38 162.2 147 62.6
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.0e-37 161.0 158 57.6
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 3.0e-37 159.5 95 86.3
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 5.1e-37 158.7 95 85.3
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 8.7e-37 157.9 114 73.7
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.1e-36 157.5 155 58.7
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.5e-36 157.1 155 58.7
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 1.9e-36 156.8 119 73.1
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 1.9e-36 156.8 137 65.7
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 4.3e-36 155.6 122 65.6
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 4.3e-36 155.6 94 84.0
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 4.3e-36 155.6 119 66.4
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 1.3e-35 154.1 90 85.6
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.6e-35 153.7 166 56.0
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 2.2e-35 153.3 89 88.8
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 2.2e-35 153.3 89 88.8
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.4e-34 149.8 123 65.9
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.2e-33 147.5 163 55.8
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.2e-33 147.5 140 61.4
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 1.2e-33 147.5 92 81.5
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.5e-33 147.1 96 79.2
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 1.5e-33 147.1 93 77.4
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 3.4e-33 146.0 151 55.6
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 7.7e-33 144.8 121 65.3
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 7.2e-31 138.3 176 48.9
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 4.6e-30 135.6 118 58.5
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 1.8e-29 133.7 129 58.1
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 1.8e-29 133.7 93 72.0
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 7.4e-28 128.3 127 60.6
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 1.4e-26 124.0 119 59.7
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 2.6e-25 119.8 103 61.2
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 2.2e-24 116.7 146 52.7
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 8.5e-24 114.8 106 59.4
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 4.7e-22 109.0 78 73.1
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 2.3e-21 106.7 106 57.5
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 3.0e-21 106.3 92 63.0
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.5e-20 104.0 106 56.6
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.5e-20 104.0 106 56.6
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 8.2e-19 98.2 85 57.6
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 4.1e-18 95.9 96 57.3
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 2.9e-16 89.7 84 53.6
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 2.2e-11 73.6 44 86.4
AagrBONN_evm.TU.Sc2ySwM_344.958 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.6e-06 56.2 90 41.1


User provided reference genes

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