Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010199.2 Cucumis melo HOM05D006256 ORTHO05D007833 1.6e-77 292.7 152 100.0
CsaV3_1G029200 Cucumis sativus L. HOM05D006256 ORTHO05D007833 6.9e-73 277.3 152 95.4
ClCG06G012650 Citrullus lanatus HOM05D006256 ORTHO05D007833 7.9e-69 263.8 152 90.8
Sed0025015 Sechium edule HOM05D006256 ORTHO05D007833 2.8e-58 228.8 153 81.0
CiPaw.15G164300 Carya illinoinensis HOM05D006256 ORTHO05D007833 4.7e-45 184.9 154 68.2
CANSAT11G0095 Cannabis sativa HOM05D006256 ORTHO05D007833 6.7e-44 181.0 153 69.3
Nn2g12458 Nelumbo nucifera HOM05D006256 ORTHO05D007833 1.1e-43 180.3 152 72.4
Dinv43283 Davidia involucrata HOM05D006256 ORTHO05D007833 4.4e-43 178.3 152 69.7
FAN07G0991 Fragaria x ananassa HOM05D006256 ORTHO05D007833 4.4e-43 178.3 151 68.2
Manes.14G113600 Manihot esculenta HOM05D006256 ORTHO05D007833 4.4e-43 178.3 152 70.4
Haze_19139 Corylus avellana HOM05D006256 ORTHO05D007833 2.2e-42 176.0 155 68.4
FAN17G2907 Fragaria x ananassa HOM05D006256 ORTHO05D007833 3.7e-42 175.3 151 67.5
FAN17G2911 Fragaria x ananassa HOM05D006256 ORTHO05D007833 3.7e-42 175.3 151 67.5
Prupe.1G102100 Prunus persica HOM05D006256 ORTHO05D007833 3.7e-42 175.3 151 66.2
RcHm_v2.0_Chr4g0405501 Rosa chinensis HOM05D006256 ORTHO05D007833 4.8e-42 174.9 151 66.9
Cfa020783 Carpinus fangiana HOM05D006256 ORTHO05D007833 1.1e-41 173.7 155 67.7
FAN22G0392 Fragaria x ananassa HOM05D006256 ORTHO05D007833 1.1e-41 173.7 150 67.3
CiPaw.16G106600 Carya illinoinensis HOM05D006256 ORTHO05D007833 3.1e-41 172.2 152 65.1
Atru.chr7.353 Acer truncatum HOM05D006256 ORTHO05D007833 4.1e-41 171.8 154 70.1
Potri.018G102700 Populus trichocarpa HOM05D006256 ORTHO05D007833 1.2e-40 170.2 151 68.9
FvH4_4g09690 Fragaria vesca HOM05D006256 ORTHO05D007833 1.6e-40 169.9 145 67.6
Cpa.g.sc199.16 Carica papaya HOM05D006256 ORTHO05D007833 2.6e-40 169.1 153 69.9
Duzib187G1001 Durio zibethinus HOM05D006256 ORTHO05D007833 3.5e-40 168.7 159 67.3
COL.COLO4_05401 Corchorus olitorius HOM05D006256 ORTHO05D007833 1.3e-39 166.8 146 67.1
MD04G1052200 Malus domestica HOM05D006256 ORTHO05D007833 1.3e-39 166.8 151 64.9
Thecc.09G154100 Theobroma cacao HOM05D006256 ORTHO05D007833 2.2e-39 166.0 146 66.4
VMungo1215G1943 Vigna mungo HOM05D006256 ORTHO05D007833 3.8e-39 165.2 151 63.6
Aa31LG7G12680 Aethionema arabicum HOM05D006256 ORTHO05D007833 6.5e-39 164.5 152 66.4
MBI15_g35737_MAGBIO Magnolia biondii HOM05D006256 ORTHO05D007833 8.5e-39 164.1 151 66.2
Ciclev10009792m.g Citrus clementina HOM05D006256 ORTHO05D007833 1.5e-38 163.3 152 65.8
Sp4g02990 Schrenkiella parvula HOM05D006256 ORTHO05D007833 1.5e-38 163.3 152 70.4
Phvul.003G153700 Phaseolus vulgaris HOM05D006256 ORTHO05D007833 2.5e-38 162.5 137 67.2
Thhalv10000362m.g Eutrema salsugineum HOM05D006256 ORTHO05D007833 3.2e-38 162.2 151 68.2
TAR626G0939 Trochodendron aralioides HOM05D006256 ORTHO05D007833 3.2e-38 162.2 152 65.1
THA.LOC104803911 Tarenaya hassleriana HOM05D006256 ORTHO05D007833 5.5e-38 161.4 162 65.4
TAR383G0166 Trochodendron aralioides HOM05D006256 ORTHO05D007833 9.4e-38 160.6 152 64.5
A04p18400 Brassica napus HOM05D006256 ORTHO05D007833 1.2e-37 160.2 151 66.2
BraA04t17452Z Brassica rapa HOM05D006256 ORTHO05D007833 1.2e-37 160.2 151 66.2
arahy.Tifrunner.gnm1.ann1.6DRS7R Arachis hypogaea HOM05D006256 ORTHO05D007833 1.6e-37 159.8 149 65.8
Lj4g0007171 Lotus japonicus HOM05D006256 ORTHO05D007833 1.6e-37 159.8 150 64.0
Sabra18G0088200 Salix brachista HOM05D006256 ORTHO05D007833 1.6e-37 159.8 150 64.7
Actinidia38660 Actinidia chinensis HOM05D006256 ORTHO05D007833 3.6e-37 158.7 148 60.8
arahy.Tifrunner.gnm1.ann1.RJ4A7B Arachis hypogaea HOM05D006256 ORTHO05D007833 3.6e-37 158.7 149 65.8
A09p56610 Brassica napus HOM05D006256 ORTHO05D007833 3.6e-37 158.7 151 66.9
BraA09t41052Z Brassica rapa HOM05D006256 ORTHO05D007833 3.6e-37 158.7 151 66.9
BcaC07g40961 Brassica carinata HOM05D006256 ORTHO05D007833 8.0e-37 157.5 151 66.9
PGR102G0560 Punica granatum HOM05D006256 ORTHO05D007833 8.0e-37 157.5 158 60.8
Eucgr.C02515 Eucalyptus grandis HOM05D006256 ORTHO05D007833 1.0e-36 157.1 153 64.1
Gohir.A08G087800 Gossypium hirsutum HOM05D006256 ORTHO05D007833 1.4e-36 156.8 132 69.7
Glyma.02G206700 Glycine max HOM05D006256 ORTHO05D007833 1.8e-36 156.4 146 65.1
Gohir.D08G098900 Gossypium hirsutum HOM05D006256 ORTHO05D007833 1.8e-36 156.4 132 69.7
Hma1.2p1_1084F.1_g255300 Hydrangea macrophylla HOM05D006256 ORTHO05D007833 1.8e-36 156.4 152 63.2
BolC4t26923H Brassica oleracea HOM05D006256 ORTHO05D007833 3.0e-36 155.6 151 66.2
C08p39560 Brassica napus HOM05D006256 ORTHO05D007833 4.0e-36 155.2 150 66.0
BolC8t51529H Brassica oleracea HOM05D006256 ORTHO05D007833 4.0e-36 155.2 150 66.0
Gorai.004G106500 Gossypium raimondii HOM05D006256 ORTHO05D007833 6.7e-36 154.5 132 68.9
Eucgr.L01548 Eucalyptus grandis HOM05D006256 ORTHO05D007833 1.5e-35 153.3 155 62.6
C04p53670 Brassica napus HOM05D006256 ORTHO05D007833 2.0e-35 152.9 151 65.6
CSS0035436 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 2.0e-35 152.9 152 61.8
AUR62025373 Chenopodium quinoa HOM05D006256 ORTHO05D007833 2.0e-35 152.9 153 61.4
TWI32G1056 Tripterygium wilfordii HOM05D006256 ORTHO05D007833 4.4e-35 151.8 155 59.4
EL10Ac8g18906 Beta vulgaris HOM05D006256 ORTHO05D007833 2.2e-34 149.4 126 68.3
AL4G14180 Arabidopsis lyrata HOM05D006256 ORTHO05D007833 3.7e-34 148.7 151 64.2
PSO063G2398 Papaver somniferum HOM05D006256 ORTHO05D007833 6.3e-34 147.9 124 69.4
vmacro06052 Vaccinium macrocarpon HOM05D006256 ORTHO05D007833 8.2e-34 147.5 148 59.5
Medtr4g130300 Medicago truncatula HOM05D006256 ORTHO05D007833 1.1e-33 147.1 152 63.2
PSO170G3639 Papaver somniferum HOM05D006256 ORTHO05D007833 1.4e-33 146.7 154 59.7
Lalb_Chr13g0300681 Lupinus albus HOM05D006256 ORTHO05D007833 1.8e-33 146.4 146 60.3
Aqoxy7G03320 Aquilegia oxysepala HOM05D006256 ORTHO05D007833 2.4e-33 146.0 154 63.6
Carub.0004s0326 Capsella rubella HOM05D006256 ORTHO05D007833 2.4e-33 146.0 152 63.2
AUR62028378 Chenopodium quinoa HOM05D006256 ORTHO05D007833 2.4e-33 146.0 149 60.4
CARHR118260 Cardamine hirsuta HOM05D006256 ORTHO05D007833 5.3e-33 144.8 152 63.2
Glyma.17G071200 Glycine max HOM05D006256 ORTHO05D007833 5.3e-33 144.8 128 66.4
CDE02G1547 Ceratophyllum demersum HOM05D006256 ORTHO05D007833 9.1e-33 144.1 154 59.1
CDE05G2121 Ceratophyllum demersum HOM05D006256 ORTHO05D007833 9.1e-33 144.1 157 58.6
AT2G24090 Arabidopsis thaliana HOM05D006256 ORTHO05D007833 1.2e-32 143.7 152 63.2
MSTRG.10713 Avicennia marina HOM05D006256 ORTHO05D007833 3.5e-32 142.1 154 59.1
Psat7g006560 Pisum sativum HOM05D006256 ORTHO05D007833 4.5e-32 141.7 151 59.6
HanXRQChr12g0357751 Helianthus annuus HOM05D006256 ORTHO05D007833 5.9e-32 141.4 133 63.9
Nitab4.5_0006744g0050 Nicotiana tabacum HOM05D006256 ORTHO05D007833 5.9e-32 141.4 149 58.4
Cc06_g14490 Coffea canephora HOM05D006256 ORTHO05D007833 7.7e-32 141.0 154 56.5
Nitab4.5_0001036g0150 Nicotiana tabacum HOM05D006256 ORTHO05D007833 1.0e-31 140.6 149 58.4
Dinv42817 Davidia involucrata HOM05D006256 ORTHO05D007833 1.3e-31 140.2 126 68.3
Peaxi162Scf00563g00414 Petunia axillaris HOM05D006256 ORTHO05D007833 2.9e-31 139.0 149 57.7
Hund08959 Selenicereus undatus HOM05D006256 ORTHO05D007833 1.5e-30 136.7 156 55.1
SGA_v2.0_scaffold222G42778 Striga asiatica HOM05D006256 ORTHO05D007833 2.5e-30 136.0 153 58.8
SalBow1G2070 Salvia bowleyana HOM05D006256 ORTHO05D007833 3.2e-30 135.6 149 55.7
QL02p094215 Quercus lobata HOM05D006256 ORTHO05D007833 5.5e-30 134.8 128 63.3
SEGI_40166 Sequoiadendron giganteum HOM05D006256 ORTHO05D007833 5.5e-30 134.8 113 70.8
Migut.K00301 Erythranthe guttata HOM05D006256 ORTHO05D007833 7.2e-30 134.4 110 68.2
Lsat_1_v5_gn_5_88481 Lactuca sativa HOM05D006256 ORTHO05D007833 7.2e-30 134.4 151 59.6
Oeu010284.1 Olea europaea HOM05D006256 ORTHO05D007833 7.2e-30 134.4 150 56.7
PGSC0003DMG400011211 Solanum tuberosum HOM05D006256 ORTHO05D007833 1.2e-29 133.7 151 57.6
Solyc07g006000.3 Solanum lycopersicum HOM05D006256 ORTHO05D007833 1.6e-29 133.3 151 57.6
Sopen07g002140 Solanum pennellii HOM05D006256 ORTHO05D007833 1.6e-29 133.3 151 57.6
ECA234G3762 Erigeron canadensis HOM05D006256 ORTHO05D007833 2.7e-29 132.5 133 60.9
Migut.J01392 Erythranthe guttata HOM05D006256 ORTHO05D007833 4.7e-29 131.7 145 55.9
Gohir.A04G058552 Gossypium hirsutum HOM05D006256 ORTHO05D007833 6.1e-29 131.3 138 61.6
HPP92_010352 Vanilla planifolia HOM05D006256 ORTHO05D007833 1.8e-28 129.8 150 54.0
GSVIVG01012574001 Vitis vinifera HOM05D006256 ORTHO05D007833 2.3e-28 129.4 70 94.3
HanXRQChr10g0307761 Helianthus annuus HOM05D006256 ORTHO05D007833 3.0e-28 129.0 134 60.4
GSVIVG01012561001 Vitis vinifera HOM05D006256 ORTHO05D007833 6.8e-28 127.9 70 92.9
Os06g0647100 Oryza sativa ssp. japonica HOM05D006256 ORTHO05D007833 2.8e-26 122.5 78 82.1
CSS0023303 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 6.3e-26 121.3 76 82.9
MBI15_g42789_MAGBIO Magnolia biondii HOM05D006256 ORTHO05D007833 6.3e-26 121.3 129 57.4
Sed0004136 Sechium edule HOM05D006256 ORTHO05D007833 5.4e-25 118.2 89 66.3
Zm00001eb386680 Zea mays HOM05D006256 ORTHO05D007833 7.0e-25 117.9 84 77.4
unitig_748.g7194 Utricularia gibba HOM05D006256 ORTHO05D007833 4.5e-24 115.2 156 51.3
BcaC02g08498 Brassica carinata HOM05D006256 ORTHO05D007833 2.2e-23 112.8 151 54.3
Actinidia33300 Actinidia chinensis HOM05D006256 ORTHO05D007833 1.5e-22 110.2 142 50.0
Ah.09g228670 Amaranthus hybridus HOM05D006256 ORTHO05D007833 3.2e-22 109.0 225 41.3
TPR.G24835 Trifolium pratense HOM05D006256 ORTHO05D007833 1.2e-19 100.5 125 55.2
CBR_g46223 Chara braunii HOM05D006256 ORTHO05D007833 7.5e-19 97.8 78 66.7
ATR0580G126 Amborella trichopoda HOM05D006256 ORTHO05D007833 2.2e-18 96.3 145 51.0
SMO164G0197 Selaginella moellendorffii HOM05D006256 ORTHO05D007833 2.2e-18 96.3 68 70.6
Mapoly0027s0042 Marchantia polymorpha HOM05D006256 ORTHO05D007833 2.8e-18 95.9 151 47.0
Rhsim03G0259400 Rhododendron simsii HOM05D006256 ORTHO05D007833 1.8e-17 93.2 93 58.1
CAN.G1190.22 Capsicum annuum HOM05D006256 ORTHO05D007833 1.6e-16 90.1 98 59.2
Pp3c22_13420 Physcomitrium patens HOM05D006256 ORTHO05D007833 4.5e-16 88.6 120 47.5
CSS0026373 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 1.7e-15 86.7 110 54.5
Pp3c21_8680 Physcomitrium patens HOM05D006256 ORTHO05D007833 1.7e-10 70.1 62 61.3
SGA_v2.0_scaffold12G06024 Striga asiatica HOM05D006256 ORTHO05D007833 3.7e-10 68.9 107 46.7
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 3.5e-08 62.4 90 46.7
Cfa020782 Carpinus fangiana HOM05D006256 ORTHO05D007833 4.6e-08 62.0 92 50.0
MCO09G536 Micromonas commoda HOM05D006256 ORTHO05D007833 7.8e-08 61.2 117 35.9
PRCOL_00001020 Prasinoderma coloniale HOM05D006256 ORTHO05D007833 1.0e-07 60.8 63 49.2
Zm00001eb000270 Zea mays HOM05D006256 ORTHO05D007833 3.3e-06 55.8 48 68.8


User provided reference genes

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