Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 1.0e-87 328.6 163 100.0
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 2.5e-83 313.9 163 95.7
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 6.9e-81 305.8 163 93.3
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 4.5e-56 223.4 164 73.8
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 5.2e-44 183.3 168 57.1
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 2.6e-43 181.0 171 53.8
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 2.6e-43 181.0 171 55.6
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 4.4e-43 180.3 177 53.1
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 4.4e-43 180.3 177 53.1
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 9.8e-43 179.1 167 55.7
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 8.3e-42 176.0 168 56.5
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 2.4e-41 174.5 171 56.1
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.4e-41 174.5 170 52.9
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 7.0e-41 172.9 160 56.9
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 2.0e-40 171.4 171 52.6
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 7.8e-40 169.5 169 56.2
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 7.8e-40 169.5 169 56.2
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 1.7e-39 168.3 164 53.0
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 4.3e-38 163.7 152 53.3
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 9.5e-38 162.5 168 48.2
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 1.4e-36 158.7 176 52.3
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.8e-36 158.3 98 72.4
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 2.3e-36 157.9 128 59.4
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 3.0e-36 157.5 165 53.3
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 5.2e-36 156.8 169 50.3
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 6.8e-36 156.4 116 61.2
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 8.9e-36 156.0 167 49.1
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 1.5e-35 155.2 135 57.0
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 2.0e-35 154.8 161 50.3
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 9.8e-35 152.5 183 45.9
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 1.3e-34 152.1 168 49.4
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 1.7e-34 151.8 152 49.3
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 2.2e-34 151.4 152 50.0
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 3.7e-34 150.6 163 50.3
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 8.3e-34 149.4 146 52.1
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 1.4e-33 148.7 142 52.1
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 5.4e-33 146.7 167 48.5
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 1.2e-32 145.6 151 49.0
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 1.2e-32 145.6 151 49.0
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 2.0e-32 144.8 175 43.4
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 2.7e-32 144.4 96 67.7
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 3.5e-32 144.1 167 47.3
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 4.6e-32 143.7 159 49.7
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 6.0e-32 143.3 142 50.0
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.0e-31 142.5 169 46.7
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.0e-31 142.5 169 46.7
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 1.3e-31 142.1 163 49.1
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 1.3e-31 142.1 167 45.5
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 1.7e-31 141.7 142 49.3
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 3.0e-31 141.0 170 46.5
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.0e-31 141.0 170 46.5
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 1.5e-30 138.7 174 44.8
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 4.3e-30 137.1 173 42.8
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 3.6e-29 134.0 168 45.2
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 2.3e-28 131.3 168 47.6
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 3.1e-28 131.0 171 43.3
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 4.0e-28 130.6 125 50.4
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 4.0e-28 130.6 166 45.8
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 6.8e-28 129.8 168 47.6
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 3.4e-27 127.5 212 37.3
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 9.8e-27 125.9 174 43.7
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 2.2e-26 124.8 162 43.8
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 2.9e-26 124.4 98 63.3
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 2.9e-26 124.4 150 46.7
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 6.4e-26 123.2 166 45.2
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 2.1e-24 118.2 76 69.7
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 2.1e-24 118.2 174 42.5
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 4.6e-24 117.1 133 48.1
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 1.0e-23 115.9 82 68.3
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 1.7e-23 115.2 129 45.0
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 3.9e-23 114.0 135 49.6
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 5.1e-23 113.6 173 39.9
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.5e-22 112.1 173 39.9
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 7.3e-22 109.8 119 45.4
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 1.6e-21 108.6 153 41.8
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 4.7e-21 107.1 76 61.8
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 8.1e-21 106.3 153 39.2
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 1.4e-20 105.5 155 41.9
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 1.8e-20 105.1 115 47.0
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 3.1e-20 104.4 172 36.6
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 6.8e-20 103.2 111 47.7
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 8.9e-20 102.8 163 36.2
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 2.0e-19 101.7 74 59.5
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 2.0e-19 101.7 162 37.0
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 2.6e-19 101.3 122 48.4
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 3.4e-19 100.9 162 38.3
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 6.4e-18 96.7 132 40.2
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 6.4e-18 96.7 134 38.1
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.1e-17 95.9 133 38.3
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 9.2e-17 92.8 212 31.1
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 6.0e-16 90.1 69 65.2
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 1.2e-13 82.4 76 52.6
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 4.9e-10 70.5 134 35.8
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 4.9e-10 70.5 134 35.8
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 8.4e-10 69.7 102 37.3
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.9e-09 68.6 124 39.5
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 5.4e-09 67.0 86 45.3
Thhalv10022408m.g Eutrema salsugineum HOM05D007620 ORTHO05D009568 6.0e-08 63.5 44 61.4
Nitab4.5_0006737g0010 Nicotiana tabacum HOM05D007620 ORTHO05D009568 1.3e-07 62.4 43 60.5
Sopen04g005200 Solanum pennellii HOM05D007620 ORTHO05D009568 3.9e-07 60.8 43 55.8
Nitab4.5_0003780g0130 Nicotiana tabacum HOM05D007620 ORTHO05D009568 5.1e-07 60.5 43 60.5
FAN18G1084 Fragaria x ananassa HOM05D002453 ORTHO05D008746 2.5e-06 58.2 88 31.8
FAN18G1604 Fragaria x ananassa HOM05D002453 ORTHO05D008746 2.5e-06 58.2 88 31.8
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 3.3e-06 57.8 95 26.3


User provided reference genes

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