Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 6.2e-128 460.7 214 100.0
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 9.3e-100 367.1 212 80.7
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 7.2e-92 340.9 212 73.6
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 1.3e-88 330.1 210 70.5
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 5.3e-87 324.7 210 70.5
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 7.7e-86 320.9 211 69.2
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.1e-84 317.0 212 67.5
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 2.0e-70 269.6 211 60.7
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-68 263.8 212 59.9
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 4.1e-63 245.4 212 55.2
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 7.0e-63 244.6 210 57.6
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 5.9e-62 241.5 188 61.2
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.9e-61 239.2 209 54.5
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.9e-61 239.2 209 54.5
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 4.2e-60 235.3 210 53.8
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 9.8e-57 224.2 212 50.9
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.6e-54 216.9 212 49.5
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.6e-54 216.9 212 49.5
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 9.4e-52 207.6 208 48.6
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 3.6e-51 205.7 215 50.2
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 6.1e-51 204.9 203 48.3
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 1.0e-50 204.1 212 48.6
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 5.2e-50 201.8 213 49.8
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.4e-49 198.7 236 44.1
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 1.1e-47 194.1 208 45.2
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 7.0e-47 191.4 208 44.2
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 2.0e-46 189.9 211 47.9
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.9e-46 188.3 221 45.2
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.9e-46 188.3 221 44.8
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 5.0e-45 185.3 211 44.5
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 6.6e-45 184.9 209 45.9
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.4e-42 177.2 207 41.5
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 1.4e-42 177.2 207 41.5
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 8.9e-42 174.5 207 41.1
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 8.9e-42 174.5 146 55.5
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.9e-42 174.5 217 42.9
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 2.0e-41 173.3 178 46.1
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.7e-41 171.8 218 44.5
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 9.8e-41 171.0 153 55.6
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 9.8e-41 171.0 153 55.6
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.7e-40 170.2 208 46.6
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 6.4e-40 168.3 213 44.6
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.8e-39 166.8 208 43.8
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.8e-39 166.8 208 43.8
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 3.2e-39 166.0 206 44.7
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 9.2e-39 164.5 206 43.2
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.2e-39 164.5 217 42.4
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 1.2e-38 164.1 216 41.2
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 5.9e-38 161.8 208 37.5
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 1.0e-37 161.0 216 39.8
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-37 160.2 215 41.4
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.6e-37 157.9 216 40.7
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 1.5e-36 157.1 225 37.3
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 1.5e-36 157.1 201 39.8
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.5e-36 157.1 216 40.7
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.5e-36 156.4 215 40.9
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.3e-36 155.6 218 41.3
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.3e-36 154.8 217 41.0
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-35 153.3 218 40.4
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.8e-35 152.9 207 38.2
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.8e-35 152.9 207 38.2
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.8e-35 152.9 217 38.7
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.6e-35 152.5 201 36.8
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-34 150.6 201 37.3
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 1.4e-34 150.6 202 38.6
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 1.4e-34 150.6 207 36.7
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 1.8e-34 150.2 205 35.1
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 4.0e-34 149.1 131 51.9
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 4.0e-34 149.1 131 51.9
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 6.8e-34 148.3 158 44.9
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 6.8e-34 148.3 207 44.0
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.9e-34 147.9 219 40.2
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 8.9e-34 147.9 140 47.1
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 1.2e-33 147.5 135 51.1
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.5e-33 147.1 127 52.0
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 1.5e-33 147.1 127 52.0
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 2.0e-33 146.7 172 43.6
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.6e-33 146.4 112 56.2
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 2.6e-33 146.4 207 36.2
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 9.8e-33 144.4 127 53.5
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.7e-32 143.7 213 42.3
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.2e-32 143.3 217 40.1
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 2.2e-32 143.3 211 39.3
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 2.9e-32 142.9 127 52.0
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.9e-32 142.9 127 52.0
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.9e-32 142.9 214 39.7
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.9e-32 142.1 218 40.4
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-31 140.6 191 44.0
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.2e-31 139.4 214 40.2
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 3.2e-31 139.4 127 50.4
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 9.2e-31 137.9 112 53.6
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 3.5e-30 136.0 209 37.3
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.5e-30 136.0 211 38.4
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.5e-30 136.0 211 38.4
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.5e-30 136.0 168 42.3
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 4.6e-30 135.6 209 37.3
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.9e-29 132.5 175 40.0
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.6e-29 131.3 203 36.5
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.5e-28 130.6 198 39.4
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-27 127.5 209 37.8
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-26 124.0 167 41.3
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 1.4e-26 124.0 211 35.5
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 1.4e-26 124.0 204 35.3
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 2.3e-26 123.2 220 35.5
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.2e-25 120.9 212 37.3
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 2.0e-25 120.2 204 34.3
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.8e-25 117.9 163 39.9
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.7e-24 117.1 74 64.9
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 2.2e-24 116.7 216 35.2
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.3e-24 114.8 145 42.8
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-23 114.4 154 41.6
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.4e-23 114.0 156 41.0
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 7.1e-23 111.7 215 31.2
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 9.2e-23 111.3 208 30.8
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-22 110.9 157 38.2
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.1e-22 110.2 150 40.0
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 6.0e-22 108.6 212 33.5
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 3.9e-21 105.9 224 33.0
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 5.1e-21 105.5 200 32.0
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 1.1e-20 104.4 171 35.1
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.9e-20 103.6 214 33.6
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 5.6e-20 102.1 160 38.1
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 7.3e-20 101.7 94 52.1
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 9.5e-20 101.3 225 28.4
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-19 100.1 116 44.0
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 2.8e-19 99.8 160 36.9
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.8e-19 99.8 112 45.5
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.6e-19 99.4 96 53.1
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 4.7e-19 99.0 160 36.2
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 1.8e-18 97.1 207 33.8
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 2.3e-18 96.7 207 33.8
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 5.2e-18 95.5 217 35.0
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 5.8e-17 92.0 219 32.4
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 7.6e-17 91.7 141 38.3
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 1.3e-16 90.9 224 31.7
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 1.3e-16 90.9 219 35.2
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 1.3e-16 90.9 219 32.4
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 1.7e-16 90.5 109 42.2
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 1.6e-14 84.0 206 30.1
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 2.7e-14 83.2 212 27.8
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.7e-13 80.5 84 45.2
HanXRQChr03g0085641 Helianthus annuus HOM05D004865 ORTHO05D005949 1.5e-12 77.4 140 38.6
Sc24g0002640 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.3e-12 76.3 164 33.5
Sed0001119 Sechium edule HOM05D004865 ORTHO05D005949 1.1e-10 71.2 154 33.8
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.9e-10 68.2 76 44.7
ClCG03G010280 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.2e-09 67.8 49 65.3
AUR62014648 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.8e-09 65.5 64 53.1
Sed0020964 Sechium edule HOM05D004865 ORTHO05D005949 5.8e-09 65.5 109 40.4
ClCG03G010090 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.1e-07 61.2 47 55.3
AUR62014651 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-06 57.8 96 36.5


User provided reference genes

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