Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 2.0e-194 682.2 328 100.0
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 3.7e-188 661.4 328 96.0
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 2.5e-184 648.7 328 94.5
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 3.2e-168 595.1 327 87.2
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.6e-159 566.2 327 82.9
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 6.5e-145 517.7 335 74.6
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 1.5e-144 516.5 345 73.6
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 7.2e-144 514.2 341 74.8
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.6e-143 513.1 335 74.6
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 1.6e-143 513.1 341 74.5
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 2.1e-143 512.7 343 73.5
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 4.7e-143 511.5 333 75.1
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 6.8e-142 507.7 332 74.7
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 9.8e-141 503.8 343 72.0
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 9.8e-141 503.8 334 74.0
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.3e-140 503.4 332 74.1
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.3e-140 503.4 331 74.0
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 2.2e-140 502.7 336 73.5
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 2.2e-140 502.7 329 72.6
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 2.8e-140 502.3 332 73.8
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 4.9e-140 501.5 323 74.9
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.4e-139 500.0 342 70.8
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 5.4e-139 498.0 329 73.9
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 7.0e-139 497.7 332 73.5
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.2e-138 496.9 333 72.7
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.6e-138 496.5 329 73.3
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.6e-138 496.5 329 73.3
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.0e-138 496.1 332 72.6
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.5e-138 495.0 329 72.6
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.9e-138 494.6 330 72.4
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 2.3e-137 492.7 334 72.8
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 7.3e-136 487.6 327 72.8
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 7.3e-136 487.6 330 71.8
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 7.3e-136 487.6 336 72.3
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 7.3e-136 487.6 334 73.1
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.2e-135 486.9 332 73.5
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 2.1e-135 486.1 332 71.4
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 2.8e-135 485.7 334 72.2
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 3.6e-135 485.3 330 73.0
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 4.7e-135 485.0 305 75.1
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 8.0e-135 484.2 346 69.7
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.8e-134 483.0 330 71.5
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.8e-134 483.0 330 71.5
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 2.3e-134 482.6 346 68.5
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 2.6e-133 479.2 334 70.7
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 2.6e-133 479.2 300 76.7
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 3.4e-133 478.8 330 71.2
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 3.4e-133 478.8 330 71.2
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.4e-133 478.4 292 78.4
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 9.8e-133 477.2 330 71.2
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.3e-132 476.9 264 83.3
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 1.3e-132 476.9 332 70.8
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 1.7e-132 476.5 347 68.3
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 1.7e-132 476.5 330 70.3
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.2e-132 476.1 332 71.1
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 3.7e-132 475.3 292 78.1
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 3.7e-132 475.3 328 72.0
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 6.4e-132 474.6 336 68.5
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 8.3e-132 474.2 329 70.5
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.1e-131 473.8 294 75.5
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.4e-131 473.4 327 70.9
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.4e-131 473.4 327 70.9
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.8e-131 473.0 329 70.2
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.8e-131 473.0 321 70.7
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.8e-131 473.0 328 72.0
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 2.4e-131 472.6 327 70.9
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 2.4e-131 472.6 326 73.0
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 3.2e-131 472.2 317 71.9
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 4.1e-131 471.9 329 70.5
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.1e-131 471.9 286 77.3
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.1e-131 471.9 328 72.0
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 7.0e-131 471.1 316 70.9
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 1.6e-130 469.9 292 77.4
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.6e-130 469.9 286 77.3
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.7e-130 469.2 263 81.4
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 2.7e-130 469.2 330 70.6
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 5.9e-130 468.0 264 83.3
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 1.0e-129 467.2 276 79.3
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 1.0e-129 467.2 307 73.9
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 1.3e-129 466.8 264 82.2
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.7e-129 466.5 335 68.7
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 5.0e-129 464.9 337 68.0
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 8.6e-129 464.2 319 69.9
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.5e-128 463.4 335 69.6
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.5e-128 462.6 263 81.7
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 2.5e-128 462.6 322 71.4
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-127 460.3 324 69.1
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 1.2e-127 460.3 324 69.1
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.2e-127 460.3 329 70.2
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.6e-127 459.9 329 69.0
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 2.1e-127 459.5 334 67.4
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 2.8e-127 459.1 322 69.9
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.6e-127 458.8 319 69.6
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 3.6e-127 458.8 323 68.1
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 8.0e-127 457.6 323 69.7
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 8.0e-127 457.6 275 77.8
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 8.0e-127 457.6 327 69.4
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 1.8e-126 456.4 327 69.1
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 3.1e-126 455.7 319 70.5
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 8.9e-126 454.1 320 69.4
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.5e-125 453.4 298 72.1
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 5.8e-125 451.4 319 69.3
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 5.8e-125 451.4 324 69.8
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 5.8e-125 451.4 324 69.4
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 9.8e-125 450.7 324 69.8
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 2.2e-124 449.5 318 69.2
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.9e-123 446.4 262 78.2
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 9.2e-123 444.1 318 67.6
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.7e-122 442.6 328 67.1
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 6.0e-122 441.4 332 67.8
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 7.8e-122 441.0 240 85.4
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-121 440.3 327 67.0
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 9.5e-120 434.1 287 72.5
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.6e-119 433.3 233 86.7
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 2.8e-119 432.6 240 82.5
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.8e-118 429.9 259 78.0
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 3.5e-114 415.6 324 62.3
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.1e-112 410.6 263 74.9
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 2.5e-112 409.5 268 72.8
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.6e-111 406.8 266 72.9
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 6.2e-111 404.8 217 84.8
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 1.8e-110 403.3 238 82.4
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 6.8e-110 401.4 216 85.2
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 8.4e-108 394.4 219 83.6
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.4e-107 393.7 217 83.9
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 3.2e-107 392.5 226 81.9
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 6.0e-106 388.3 323 61.6
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.0e-105 387.5 217 81.6
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.6e-103 380.2 312 62.2
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 2.4e-102 376.3 265 68.3
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 3.4e-101 372.5 208 83.7
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 2.1e-98 363.2 219 74.0
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 5.3e-94 348.6 321 54.8
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 5.4e-91 338.6 319 57.1
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 1.0e-89 334.3 290 59.7
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.5e-80 303.9 237 65.8
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 5.3e-78 295.4 233 60.1
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 6.0e-74 282.0 151 86.1
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.9e-72 276.9 154 82.5
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 9.6e-72 274.6 237 59.1
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 2.8e-71 273.1 211 66.4
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 5.3e-70 268.9 219 63.5
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 1.3e-65 254.2 149 77.2
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.9e-64 250.4 213 61.5
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.0e-61 240.4 216 59.3
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 4.8e-55 219.2 127 79.5
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 5.2e-49 199.1 147 64.6
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 1.2e-37 161.4 171 50.3
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 3.8e-20 103.2 112 55.4
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 3.0e-17 93.6 109 55.0
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 2.6e-16 90.5 83 54.2
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 6.4e-15 85.9 49 75.5
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 7.0e-14 82.4 108 39.8


User provided reference genes

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