Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 8.4e-157 557.0 284 100.0
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 8.6e-93 344.4 284 67.6
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 1.5e-84 317.0 284 63.4
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 2.8e-83 312.8 162 95.1
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 9.5e-76 287.7 281 56.6
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 5.2e-74 282.0 284 56.3
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 1.5e-73 280.4 287 55.1
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 3.4e-73 279.3 289 55.4
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 5.8e-73 278.5 284 53.9
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 7.6e-73 278.1 284 54.6
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 1.4e-71 273.9 291 53.3
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 4.1e-71 272.3 285 54.0
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 7.1e-71 271.6 289 54.0
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 3.5e-70 269.2 287 54.0
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 3.5e-70 269.2 280 53.9
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.6e-70 268.9 289 53.6
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 4.6e-70 268.9 290 54.5
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.0e-69 267.7 289 53.3
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 5.1e-69 265.4 280 53.2
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 6.6e-69 265.0 290 52.1
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 6.6e-69 265.0 284 53.5
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 8.6e-69 264.6 289 52.6
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.9e-68 263.5 290 52.1
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 3.6e-67 259.2 290 51.4
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 1.4e-66 257.3 328 47.0
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.8e-66 256.9 292 52.4
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 3.1e-66 256.1 284 50.4
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 4.0e-66 255.8 284 51.1
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 5.2e-66 255.4 289 50.2
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 8.9e-66 254.6 292 52.1
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 1.3e-64 250.8 283 50.2
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 1.7e-64 250.4 283 49.5
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.7e-64 250.4 295 50.8
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 3.8e-64 249.2 291 49.5
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 3.8e-64 249.2 289 48.4
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 4.9e-64 248.8 281 49.5
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.2e-63 245.7 170 71.8
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 4.2e-63 245.7 276 50.4
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 5.4e-63 245.4 291 51.2
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 1.2e-62 244.2 287 50.5
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.2e-62 244.2 291 48.5
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.0e-61 241.1 283 50.5
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 8.7e-61 238.0 283 48.4
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 1.1e-60 237.7 286 49.7
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 1.5e-60 237.3 273 48.7
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 1.9e-60 236.9 278 48.6
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 2.5e-60 236.5 278 50.0
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 3.3e-60 236.1 278 50.0
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.3e-59 234.2 320 45.0
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.6e-59 233.8 287 47.0
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 2.1e-59 233.4 283 48.4
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 2.1e-59 233.4 289 47.1
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 3.6e-59 232.6 289 47.8
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 8.1e-59 231.5 275 46.9
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 3.1e-58 229.6 286 45.5
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 5.3e-58 228.8 284 47.2
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 5.3e-58 228.8 281 47.3
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 5.3e-58 228.8 291 47.8
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 1.2e-57 227.6 302 44.0
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 1.5e-57 227.3 302 44.0
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 3.4e-57 226.1 284 46.5
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 1.7e-56 223.8 278 45.3
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.7e-56 223.8 281 46.6
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 2.9e-56 223.0 273 46.2
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 3.8e-56 222.6 273 46.2
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 3.8e-56 222.6 275 46.2
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 4.9e-56 222.2 270 45.2
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 6.4e-56 221.9 284 45.8
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 8.4e-56 221.5 275 45.8
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 8.4e-56 221.5 278 45.0
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 8.4e-56 221.5 278 45.0
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 1.1e-55 221.1 278 45.3
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 1.1e-55 221.1 278 45.0
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.1e-55 221.1 285 43.9
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 2.4e-55 219.9 285 46.0
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 2.4e-55 219.9 269 46.1
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 2.4e-55 219.9 284 45.4
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 2.4e-55 219.9 273 45.8
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 5.4e-55 218.8 284 45.4
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 5.4e-55 218.8 401 37.4
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.2e-54 217.6 284 45.8
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 4.6e-54 215.7 284 45.1
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 4.6e-54 215.7 273 46.5
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 6.0e-54 215.3 273 44.3
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 2.3e-53 213.4 280 44.6
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 5.1e-53 212.2 279 42.3
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 6.6e-53 211.8 305 41.0
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 2.5e-52 209.9 285 42.8
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 4.3e-52 209.1 272 47.8
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.3e-51 207.6 164 66.5
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.6e-51 207.2 187 61.5
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 3.6e-51 206.1 163 63.2
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 6.2e-51 205.3 289 42.6
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 1.4e-50 204.1 318 41.5
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.8e-50 203.8 378 37.8
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 4.0e-50 202.6 284 41.5
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 1.9e-47 193.7 203 53.2
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 2.1e-46 190.3 228 49.6
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 3.5e-46 189.5 270 42.6
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 4.6e-46 189.1 224 47.3
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 1.0e-45 188.0 289 41.2
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 1.8e-45 187.2 290 41.4
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 6.7e-45 185.3 122 74.6
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 4.9e-40 169.1 156 51.9
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 6.5e-40 168.7 109 73.4
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 3.9e-37 159.5 115 70.4
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 3.3e-36 156.4 101 75.2
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.6e-35 154.1 89 87.6
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.1e-35 153.7 175 42.3
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 2.1e-35 153.7 255 40.0
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 4.8e-35 152.5 205 45.4
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 1.8e-34 150.6 175 45.1
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 2.7e-30 136.7 100 69.0
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 8.7e-29 131.7 168 45.8
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 1.9e-28 130.6 98 66.3
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 1.3e-27 127.9 249 33.3
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 2.3e-21 107.1 292 31.5
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 2.8e-19 100.1 203 35.0
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 4.8e-19 99.4 80 62.5
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.9e-18 95.5 89 55.1
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 1.2e-17 94.7 90 53.3
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.0e-17 94.0 89 51.7
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.6e-17 93.6 215 34.4
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.3e-16 91.3 89 51.7
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 1.1e-15 88.2 164 35.4
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 2.7e-14 83.6 53 81.1
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 6.1e-14 82.4 56 76.8
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 3.9e-13 79.7 70 58.6
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 1.1e-12 78.2 143 33.6
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.5e-12 77.8 86 54.7
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 4.4e-12 76.3 106 37.7
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 9.7e-12 75.1 157 33.1
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.2e-11 73.9 52 67.3
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.3e-10 69.3 49 69.4
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 7.0e-10 68.9 58 56.9
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 7.0e-10 68.9 153 34.6
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 9.1e-10 68.6 55 58.2
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 9.1e-10 68.6 55 58.2


User provided reference genes

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