Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 2.2e-191 672.2 351 100.0
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 3.9e-164 581.6 330 93.3
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 1.7e-154 549.7 330 87.9
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 1.5e-110 403.7 350 66.0
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 2.5e-110 402.9 354 64.7
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 1.4e-108 397.1 356 63.2
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 1.7e-98 363.6 350 59.7
Sed0025994 Sechium edule HOM05D000122 ORTHO05D000139 1.4e-76 290.8 302 57.6
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.2e-51 208.0 333 42.0
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 5.9e-51 205.7 331 40.8
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.7e-50 204.1 328 40.9
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 3.7e-45 186.4 321 37.7
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 8.2e-45 185.3 322 39.4
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 1.8e-44 184.1 329 38.3
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 2.4e-44 183.7 334 38.9
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 4.1e-44 183.0 354 36.7
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 5.9e-43 179.1 335 37.6
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.7e-42 177.6 325 37.2
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 5.0e-42 176.0 332 36.7
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 8.5e-42 175.3 327 35.8
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 2.1e-40 170.6 281 37.7
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 2.1e-40 170.6 312 35.6
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 1.4e-39 167.9 321 34.6
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 3.0e-39 166.8 310 36.5
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 2.0e-38 164.1 324 34.3
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 4.4e-38 162.9 334 36.2
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 1.3e-37 161.4 316 36.7
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 1.3e-37 161.4 331 35.6
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 2.2e-37 160.6 329 33.7
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 4.8e-37 159.5 320 35.0
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 6.3e-37 159.1 324 33.6
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 8.3e-37 158.7 324 33.6
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.4e-36 157.1 322 37.0
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 2.4e-36 157.1 324 36.1
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 3.1e-36 156.8 341 33.1
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 5.9e-35 152.5 316 34.8
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 3.8e-34 149.8 344 35.2
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 5.0e-34 149.4 332 34.9
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 8.5e-34 148.7 323 35.0
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.2e-32 144.8 328 34.5
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 8.0e-32 142.1 329 31.9
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 2.3e-31 140.6 340 34.7
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 7.5e-30 135.6 352 30.7
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 1.1e-28 131.7 329 33.7
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 9.1e-28 128.6 330 31.8
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 1.3e-26 124.8 330 28.8
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 2.9e-26 123.6 325 31.4
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 6.6e-26 122.5 327 30.3
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 6.6e-26 122.5 327 30.3
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 8.6e-26 122.1 330 30.3
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 1.5e-25 121.3 340 29.7
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 1.5e-25 121.3 328 31.7
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 2.5e-25 120.6 343 32.7
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 7.2e-25 119.0 340 29.7
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.2e-24 118.2 326 32.2
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 1.6e-24 117.9 314 30.9
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 1.6e-24 117.9 328 30.5
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.8e-24 117.1 327 30.9
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 4.7e-24 116.3 336 31.8
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.7e-24 116.3 327 30.6
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 4.7e-24 116.3 337 29.4
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.0e-23 115.2 329 31.0
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 1.8e-23 114.4 329 29.8
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 5.2e-23 112.8 325 32.6
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 1.5e-22 111.3 333 32.4
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 2.0e-22 110.9 355 29.3
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 2.6e-22 110.5 350 30.3
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 2.6e-22 110.5 329 30.7
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.4e-22 109.8 340 28.5
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 4.4e-22 109.8 341 27.9
Atru.chr6.2186 Acer truncatum HOM05D003615 ORTHO05D004858 5.7e-22 109.4 203 37.9
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 5.7e-22 109.4 338 29.3
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 5.7e-22 109.4 341 29.9
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 9.8e-22 108.6 332 29.8
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 1.7e-21 107.8 339 28.9
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 2.2e-21 107.5 355 29.3
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 2.2e-21 107.5 327 32.4
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 2.9e-21 107.1 338 29.0
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 3.7e-21 106.7 328 31.1
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 3.7e-21 106.7 348 28.2
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.7e-21 106.7 340 27.4
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 8.3e-21 105.5 335 29.9
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 8.3e-21 105.5 246 33.7
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 1.4e-20 104.8 127 40.9
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 2.4e-20 104.0 350 28.6
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.4e-20 104.0 327 30.0
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 3.2e-20 103.6 319 29.8
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 3.2e-20 103.6 343 29.7
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 3.2e-20 103.6 330 28.2
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 4.1e-20 103.2 348 29.3
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 4.1e-20 103.2 329 28.6
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 7.0e-20 102.4 349 28.4
FAN14G2568 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.2e-19 101.7 224 34.8
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 1.6e-19 101.3 204 32.4
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 2.0e-19 100.9 360 27.5
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 2.0e-19 100.9 328 28.0
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 2.7e-19 100.5 232 31.5
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 3.5e-19 100.1 240 32.5
FAN14G3971 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.8e-19 99.0 203 36.0
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 1.3e-18 98.2 202 31.7
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 1.3e-18 98.2 198 32.3
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 1.7e-18 97.8 346 28.9
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 2.3e-18 97.4 346 28.0
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 2.9e-18 97.1 373 26.0
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 5.0e-18 96.3 215 33.0
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 1.1e-17 95.1 116 43.1
FAN05G3998 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.1e-17 95.1 192 37.5
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 1.5e-17 94.7 222 32.9
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 2.5e-17 94.0 370 25.4
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 3.3e-17 93.6 350 27.7
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 5.6e-17 92.8 318 27.7
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 7.3e-17 92.4 362 28.2
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 2.1e-16 90.9 364 26.6
AUR62014009 Chenopodium quinoa HOM05D003615 ORTHO05D004858 6.2e-16 89.4 124 37.9
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 1.0e-15 88.6 115 41.7
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 1.4e-15 88.2 378 26.2
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.4e-15 88.2 357 27.7
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 1.8e-15 87.8 321 27.7
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 3.1e-15 87.0 369 25.5
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 3.1e-15 87.0 122 41.8
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 4.0e-15 86.7 332 28.0
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 8.9e-15 85.5 362 25.7
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 8.9e-15 85.5 314 27.4
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 1.5e-14 84.7 128 40.6
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 9.8e-14 82.0 286 27.3
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 9.8e-14 82.0 366 23.5
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 1.7e-13 81.3 354 25.7
FAN09G2044 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.9e-13 80.5 319 27.0
Eucgr.B03353 Eucalyptus grandis HOM05D003615 ORTHO05D015110 3.7e-13 80.1 313 26.8
PGR142G2932 Punica granatum HOM05D003615 ORTHO05D004858 3.7e-13 80.1 85 49.4
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 4.9e-13 79.7 354 25.1
CANSAT01G3275 Cannabis sativa HOM05D003615 ORTHO05D004858 2.4e-12 77.4 182 32.4
Eucgr.B03350 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.4e-12 77.4 312 28.2
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 4.1e-12 76.6 358 24.9
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 5.4e-12 76.3 355 24.8
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 5.4e-12 76.3 358 24.6
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 5.4e-12 76.3 348 25.6
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 5.4e-12 76.3 163 34.4
AUR62014010 Chenopodium quinoa HOM05D003615 ORTHO05D004858 7.0e-12 75.9 360 26.1
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 9.2e-12 75.5 358 24.6
Sc18g0001840 Simmondsia chinensis HOM05D003615 ORTHO05D004858 9.2e-12 75.5 243 29.6
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 1.6e-11 74.7 358 24.0
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 4.6e-11 73.2 183 32.8
Prupe.1G255800 Prunus persica HOM05D003615 ORTHO05D015110 6.0e-11 72.8 107 37.4
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 8.6e-10 68.9 97 40.2
MD16G1090400 Malus domestica HOM05D003615 ORTHO05D015110 2.5e-09 67.4 317 26.2
TAR374G0412 Trochodendron aralioides HOM05D002682 ORTHO05D002878 7.3e-09 65.9 159 29.6
Eucgr.L03458 Eucalyptus grandis HOM05D003615 ORTHO05D004858 9.5e-09 65.5 204 28.9
MD16G1090500 Malus domestica HOM05D003615 ORTHO05D004858 1.2e-08 65.1 88 40.9
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 2.8e-08 63.9 246 28.9
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 4.7e-08 63.2 118 36.4
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 4.7e-08 63.2 309 24.6
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 6.2e-08 62.8 190 30.0
BcaB07g32359 Brassica carinata HOM05D003615 ORTHO05D004858 1.8e-07 61.2 298 24.5
MD16G1090300 Malus domestica HOM05D003615 ORTHO05D015110 3.1e-07 60.5 302 29.5
Duzib187G1117 Durio zibethinus HOM05D003615 ORTHO05D004858 3.4e-06 57.0 148 33.1
AL1G37590 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 7.5e-06 55.8 119 31.1
FAN11G0954 Fragaria x ananassa HOM05D003615 ORTHO05D004858 7.5e-06 55.8 75 33.3
Medtr8g090020 Medicago truncatula HOM05D003615 ORTHO05D004858 7.5e-06 55.8 253 26.1


User provided reference genes

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