Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 1.1e-90 336.7 182 100.0
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 3.3e-82 308.5 182 92.3
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 5.4e-56 221.5 183 72.7
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 9.8e-50 200.7 186 68.3
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 4.7e-44 181.8 190 63.7
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 1.1e-37 160.6 184 55.4
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.9e-37 159.8 184 52.2
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 2.5e-37 159.5 177 54.8
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 3.3e-37 159.1 182 56.6
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 9.5e-37 157.5 193 52.3
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 1.2e-36 157.1 137 66.4
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 2.1e-36 156.4 188 55.3
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 1.8e-35 153.3 146 58.9
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 2.3e-35 152.9 185 51.4
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 3.1e-35 152.5 188 53.7
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 4.0e-35 152.1 188 52.7
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 8.9e-35 151.0 171 55.6
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 1.2e-34 150.6 186 52.7
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 2.6e-34 149.4 122 67.2
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.6e-34 149.4 186 52.2
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 3.4e-34 149.1 183 50.8
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 3.4e-34 149.1 188 56.4
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 7.6e-34 147.9 123 67.5
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 9.9e-34 147.5 183 50.8
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 9.9e-34 147.5 94 80.9
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 1.3e-33 147.1 128 62.5
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 1.7e-33 146.7 189 52.9
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.2e-33 146.4 183 53.0
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.9e-33 146.0 106 73.6
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 2.9e-33 146.0 179 52.0
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 2.9e-33 146.0 186 50.5
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 3.8e-33 145.6 188 51.1
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 3.8e-33 145.6 97 81.4
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 3.8e-33 145.6 141 59.6
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 4.9e-33 145.2 181 52.5
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.9e-33 145.2 181 52.5
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 6.4e-33 144.8 188 51.6
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 6.4e-33 144.8 125 64.0
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 8.4e-33 144.4 185 51.4
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 8.4e-33 144.4 94 80.9
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 1.1e-32 144.1 175 54.3
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 1.1e-32 144.1 184 53.8
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.9e-32 143.3 177 54.2
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 2.4e-32 142.9 186 50.5
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 3.2e-32 142.5 185 52.4
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 4.1e-32 142.1 184 51.1
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 5.4e-32 141.7 186 52.2
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 5.4e-32 141.7 96 75.0
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 5.4e-32 141.7 93 76.3
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 5.4e-32 141.7 96 75.0
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 5.4e-32 141.7 96 75.0
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 5.4e-32 141.7 93 76.3
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 5.4e-32 141.7 190 50.0
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 7.1e-32 141.4 183 51.9
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 7.1e-32 141.4 188 50.0
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 9.2e-32 141.0 187 52.4
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.2e-31 140.6 155 54.2
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.1e-31 139.8 166 51.8
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 2.1e-31 139.8 104 70.2
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 3.5e-31 139.0 187 48.7
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 4.6e-31 138.7 98 73.5
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 4.6e-31 138.7 125 61.6
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 6.0e-31 138.3 188 48.4
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 6.0e-31 138.3 188 48.4
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 6.0e-31 138.3 192 47.4
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 6.0e-31 138.3 92 79.3
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 6.0e-31 138.3 143 59.4
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 7.8e-31 137.9 190 47.4
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 7.8e-31 137.9 126 61.1
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.0e-30 137.5 188 49.5
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 1.3e-30 137.1 187 48.7
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.3e-30 137.1 91 75.8
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.3e-30 137.1 199 46.7
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 3.9e-30 135.6 185 49.7
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.9e-30 135.6 183 50.3
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 3.9e-30 135.6 127 63.0
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 3.9e-30 135.6 180 48.3
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 3.9e-30 135.6 186 46.8
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 5.1e-30 135.2 187 51.9
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 6.6e-30 134.8 189 50.8
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 8.6e-30 134.4 139 57.6
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 8.6e-30 134.4 185 50.3
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 8.6e-30 134.4 82 82.9
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.1e-29 134.0 152 52.0
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.1e-29 134.0 160 54.4
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.5e-29 133.7 186 46.2
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 1.9e-29 133.3 91 74.7
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 1.9e-29 133.3 91 74.7
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 2.5e-29 132.9 92 72.8
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.5e-29 132.9 221 46.2
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 2.5e-29 132.9 201 46.3
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 4.3e-29 132.1 189 48.1
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 4.3e-29 132.1 127 57.5
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 4.3e-29 132.1 171 51.5
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 7.3e-29 131.3 172 51.7
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.2e-28 130.6 161 48.4
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.6e-28 130.2 155 53.5
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.4e-27 127.1 107 63.6
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 2.4e-27 126.3 192 49.5
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.4e-27 126.3 128 59.4
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 2.4e-27 126.3 196 44.4
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.1e-27 125.9 128 58.6
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 6.4e-25 118.2 77 76.6
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 8.4e-25 117.9 172 47.7
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 1.4e-24 117.1 150 48.0
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 2.4e-24 116.3 128 51.6
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 3.2e-24 115.9 82 72.0
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 5.4e-24 115.2 183 45.4
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 7.8e-23 111.3 90 62.2
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 7.3e-21 104.8 78 65.4
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.6e-20 103.6 72 75.0
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 3.1e-19 99.4 73 69.9
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 6.9e-19 98.2 118 50.0
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.2e-18 97.4 86 57.0
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 4.5e-18 95.5 86 57.0
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 4.2e-16 89.0 84 52.4
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.7e-15 86.3 58 74.1
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 8.7e-14 81.3 139 42.4
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 7.4e-13 78.2 62 67.7
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 8.1e-12 74.7 61 67.2
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 1.4e-11 73.9 120 44.2
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 6.9e-11 71.6 76 56.6
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 9.0e-11 71.2 118 33.9
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 4.5e-10 68.9 144 40.3
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 2.9e-09 66.2 42 81.0
Gohir.A13G059250 Gossypium hirsutum HOM05D001962 ORTHO05D019237 1.4e-08 63.9 175 33.1
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 1.4e-08 63.9 144 34.7
Gohir.A08G189616 Gossypium hirsutum HOM05D001962 ORTHO05D019237 3.2e-08 62.8 175 33.1
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 9.3e-08 61.2 68 52.9
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 1.8e-06 57.0 134 34.3
Gorai.N013200 Gossypium raimondii HOM05D001962 ORTHO05D019237 5.1e-06 55.5 176 32.4


User provided reference genes

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