Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009857.2 Cucumis melo HOM05D000083 ORTHO05D166786 9.5e-46 186.4 90 100.0
MELO3C007565.2 Cucumis melo HOM05D000083 ORTHO05D000196 3.2e-17 91.7 59 72.9
CsaV3_6G043320 Cucumis sativus L. HOM05D000083 ORTHO05D000196 2.1e-16 89.0 59 72.9
ClCG01G016870 Citrullus lanatus HOM05D000083 ORTHO05D000196 2.5e-14 82.0 59 67.8
Sed0002998 Sechium edule HOM05D000083 ORTHO05D000196 2.0e-11 72.4 59 62.7
Aa31LG6G14020 Aethionema arabicum HOM05D000083 ORTHO05D000196 6.4e-10 67.4 58 56.9
Duzib147G1078 Durio zibethinus HOM05D000083 ORTHO05D000196 6.4e-10 67.4 59 57.6
CiPaw.02G007800 Carya illinoinensis HOM05D000083 ORTHO05D000196 1.1e-09 66.6 59 59.3
Carub.0007s0314 Capsella rubella HOM05D000083 ORTHO05D000196 1.4e-09 66.2 58 56.9
AT4G36950 Arabidopsis thaliana HOM05D000083 ORTHO05D000196 1.9e-09 65.9 59 55.9
Atru.chr3.311 Acer truncatum HOM05D000083 ORTHO05D000196 2.4e-09 65.5 59 54.2
Sp2g29600 Schrenkiella parvula HOM05D000083 ORTHO05D000196 2.4e-09 65.5 71 49.3
Aa31LG1G15600 Aethionema arabicum HOM05D000083 ORTHO05D000196 4.2e-09 64.7 58 55.2
Thhalv10004510m.g Eutrema salsugineum HOM05D000083 ORTHO05D000196 4.2e-09 64.7 71 47.9
Cfa004030 Carpinus fangiana HOM05D000083 ORTHO05D000196 5.4e-09 64.3 59 59.3
Duzib187G0368 Durio zibethinus HOM05D000083 ORTHO05D000196 5.4e-09 64.3 87 42.5
Gohir.D12G070000 Gossypium hirsutum HOM05D000083 ORTHO05D000196 5.4e-09 64.3 59 54.2
THA.LOC104807587 Tarenaya hassleriana HOM05D000083 ORTHO05D000196 5.4e-09 64.3 59 55.9
Thecc.01G057700 Theobroma cacao HOM05D000083 ORTHO05D000196 5.4e-09 64.3 59 54.2
AL7G13720 Arabidopsis lyrata HOM05D000083 ORTHO05D000196 7.1e-09 63.9 58 55.2
AL8G44290 Arabidopsis lyrata HOM05D000083 ORTHO05D000196 7.1e-09 63.9 59 54.2
Duzib192G0826 Durio zibethinus HOM05D000083 ORTHO05D000196 7.1e-09 63.9 59 55.9
Thhalv10027234m.g Eutrema salsugineum HOM05D000083 ORTHO05D000196 7.1e-09 63.9 58 55.2
Gohir.A11G192940 Gossypium hirsutum HOM05D000083 ORTHO05D000196 7.1e-09 63.9 59 52.5
Gohir.A12G072100 Gossypium hirsutum HOM05D000083 ORTHO05D000196 9.3e-09 63.5 59 54.2
Gohir.D03G023900 Gossypium hirsutum HOM05D000083 ORTHO05D000196 9.3e-09 63.5 86 43.0
Sp7g34810 Schrenkiella parvula HOM05D000083 ORTHO05D000196 9.3e-09 63.5 58 55.2
A01p01810 Brassica napus HOM05D000083 ORTHO05D000196 1.2e-08 63.2 86 44.2
BraA01t00171Z Brassica rapa HOM05D000083 ORTHO05D000196 1.2e-08 63.2 86 44.2
CARHR280570 Cardamine hirsuta HOM05D000083 ORTHO05D000196 1.2e-08 63.2 59 54.2
COL.COLO4_11435 Corchorus olitorius HOM05D000083 ORTHO05D000196 1.2e-08 63.2 59 55.9
AT5G67080 Arabidopsis thaliana HOM05D000083 ORTHO05D000196 1.6e-08 62.8 59 54.2
CARHR245550 Cardamine hirsuta HOM05D000083 ORTHO05D000196 1.6e-08 62.8 58 55.2
BcaB02g09960 Brassica carinata HOM05D000083 ORTHO05D000196 2.7e-08 62.0 59 52.5
BcaC06g34787 Brassica carinata HOM05D000083 ORTHO05D000196 2.7e-08 62.0 59 52.5
BcaC06g34788 Brassica carinata HOM05D000083 ORTHO05D000196 2.7e-08 62.0 59 52.5
C07p24680 Brassica napus HOM05D000083 ORTHO05D000196 2.7e-08 62.0 59 52.5
BolC7t42988H Brassica oleracea HOM05D000083 ORTHO05D000196 2.7e-08 62.0 59 52.5
Haze_15387 Corylus avellana HOM05D000083 ORTHO05D000196 2.7e-08 62.0 59 57.6
Gohir.D11G199800 Gossypium hirsutum HOM05D000083 ORTHO05D000196 2.7e-08 62.0 59 54.2
Gorai.007G213900 Gossypium raimondii HOM05D000083 ORTHO05D000196 2.7e-08 62.0 59 54.2
A07p16870 Brassica napus HOM05D000083 ORTHO05D000196 3.5e-08 61.6 59 54.2
BraA07t29412Z Brassica rapa HOM05D000083 ORTHO05D000196 3.5e-08 61.6 59 54.2
TWI09G1025 Tripterygium wilfordii HOM05D000083 ORTHO05D000196 3.5e-08 61.6 59 55.9
BcaNung02523 Brassica carinata HOM05D000083 ORTHO05D000196 6.0e-08 60.8 58 51.7
THA.LOC104819238 Tarenaya hassleriana HOM05D000083 ORTHO05D000196 6.0e-08 60.8 59 52.5
AT3G50310 Arabidopsis thaliana HOM05D000083 ORTHO05D000196 7.8e-08 60.5 59 52.5
Gohir.A02G156800 Gossypium hirsutum HOM05D000083 ORTHO05D000196 7.8e-08 60.5 58 51.7
Gorai.008G077000 Gossypium raimondii HOM05D000083 ORTHO05D000196 7.8e-08 60.5 59 52.5
THA.LOC104827185 Tarenaya hassleriana HOM05D000083 ORTHO05D000196 7.8e-08 60.5 58 53.4
CARHR159780 Cardamine hirsuta HOM05D000083 ORTHO05D000196 1.0e-07 60.1 59 52.5
Gorai.003G025400 Gossypium raimondii HOM05D000083 ORTHO05D000196 1.0e-07 60.1 58 51.7
C01p01950 Brassica napus HOM05D000083 ORTHO05D000196 1.7e-07 59.3 58 51.7
BolC1t00189H Brassica oleracea HOM05D000083 ORTHO05D000196 1.7e-07 59.3 58 51.7
Carub.0008s2743 Capsella rubella HOM05D000083 ORTHO05D000196 1.7e-07 59.3 59 50.8
Duzib264G0941 Durio zibethinus HOM05D000083 ORTHO05D000196 1.7e-07 59.3 59 49.2
Prupe.7G132100 Prunus persica HOM05D000083 ORTHO05D000196 1.7e-07 59.3 71 46.5
Aa31LG4G18550 Aethionema arabicum HOM05D000083 ORTHO05D000196 2.3e-07 58.9 67 49.3
Thecc.05G201900 Theobroma cacao HOM05D000083 ORTHO05D000196 2.3e-07 58.9 54 59.3
BcaB02g09959 Brassica carinata HOM05D000083 ORTHO05D000196 3.9e-07 58.2 59 50.8
Glyma.05G094400 Glycine max HOM05D000083 ORTHO05D000196 3.9e-07 58.2 58 50.0
Lj4g0013764 Lotus japonicus HOM05D000083 ORTHO05D000196 3.9e-07 58.2 69 44.9
Lalb_Chr05g0226521 Lupinus albus HOM05D000083 ORTHO05D000196 3.9e-07 58.2 58 50.0
Cpa.g.sc55.140 Carica papaya HOM05D000083 ORTHO05D000196 5.1e-07 57.8 59 47.5
CiPaw.01G017300 Carya illinoinensis HOM05D000083 ORTHO05D000196 5.1e-07 57.8 68 48.5
THA.LOC104821254 Tarenaya hassleriana HOM05D000083 ORTHO05D000196 5.1e-07 57.8 59 52.5
AL5G30440 Arabidopsis lyrata HOM05D000083 ORTHO05D000196 6.6e-07 57.4 59 50.8
BcaNung05426 Brassica carinata HOM05D000083 ORTHO05D000196 6.6e-07 57.4 58 50.0
A01p24210 Brassica napus HOM05D000083 ORTHO05D000196 6.6e-07 57.4 71 46.5
BraA01t02333Z Brassica rapa HOM05D000083 ORTHO05D000196 6.6e-07 57.4 71 46.5
Carub.0005s1663 Capsella rubella HOM05D000083 ORTHO05D000196 6.6e-07 57.4 59 50.8
Ca_22158_v3 Cicer arietinum L. HOM05D000083 ORTHO05D000196 6.6e-07 57.4 70 44.3
Dinv26834 Davidia involucrata HOM05D000083 ORTHO05D000196 6.6e-07 57.4 54 57.4
TWI73G0219 Tripterygium wilfordii HOM05D000083 ORTHO05D000196 6.6e-07 57.4 59 49.2
MSTRG.15385 Avicennia marina HOM05D000083 ORTHO05D000196 8.7e-07 57.0 59 52.5
MSTRG.3429 Avicennia marina HOM05D000083 ORTHO05D000196 1.1e-06 56.6 59 52.5
RcHm_v2.0_Chr2g0105831 Rosa chinensis HOM05D000083 ORTHO05D000196 1.1e-06 56.6 71 46.5
MD15G1285100 Malus domestica HOM05D000083 ORTHO05D000196 1.9e-06 55.8 71 47.9
Psat2g166480 Pisum sativum HOM05D000083 ORTHO05D000196 1.9e-06 55.8 57 49.1
Cc07_g06080 Coffea canephora HOM05D000083 ORTHO05D000196 2.5e-06 55.5 67 47.8
FAN19G3055 Fragaria x ananassa HOM05D000083 ORTHO05D000196 2.5e-06 55.5 71 47.9
FAN23G0550 Fragaria x ananassa HOM05D000083 ORTHO05D000196 2.5e-06 55.5 71 47.9
FAN26G2198 Fragaria x ananassa HOM05D000083 ORTHO05D000196 2.5e-06 55.5 71 47.9
Glyma.17G173000 Glycine max HOM05D000083 ORTHO05D000196 2.5e-06 55.5 57 49.1
Lj2g0022125 Lotus japonicus HOM05D000083 ORTHO05D000196 2.5e-06 55.5 57 49.1
Sp5g11870 Schrenkiella parvula HOM05D000083 ORTHO05D000196 2.5e-06 55.5 59 50.8
CDE02G0662 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 3.3e-06 55.1 87 40.2
FvH4_1g16150 Fragaria vesca HOM05D000083 ORTHO05D000196 3.3e-06 55.1 71 47.9
Oeu014833.1 Olea europaea HOM05D000083 ORTHO05D000196 3.3e-06 55.1 58 53.4
Sc03g0001620 Simmondsia chinensis HOM05D000083 ORTHO05D000196 3.3e-06 55.1 59 44.1
Lj2g0020617 Lotus japonicus HOM05D000083 ORTHO05D000196 4.3e-06 54.7 57 50.9
Psat4g086600 Pisum sativum HOM05D000083 ORTHO05D000196 4.3e-06 54.7 69 43.5
Ah.03g145370 Amaranthus hybridus HOM05D000083 ORTHO05D000196 7.3e-06 53.9 71 39.4
CSS0024866 Camellia sinensis var. sinensis HOM05D000083 ORTHO05D000196 7.3e-06 53.9 59 50.8
Gohir.A10G091500 Gossypium hirsutum HOM05D000083 ORTHO05D000196 7.3e-06 53.9 71 45.1
EL10Ac6g15734 Beta vulgaris HOM05D000083 ORTHO05D000196 9.6e-06 53.5 69 39.1
CsaV3_2G016490 Cucumis sativus L. HOM05D000083 ORTHO05D000196 9.6e-06 53.5 82 41.5
FAN28G1404 Fragaria x ananassa HOM05D000083 ORTHO05D000196 9.6e-06 53.5 71 46.5
Gohir.D10G096700 Gossypium hirsutum HOM05D000083 ORTHO05D000196 9.6e-06 53.5 59 50.8
Gorai.011G106000 Gossypium raimondii HOM05D000083 ORTHO05D000196 9.6e-06 53.5 59 50.8
Oeu031963.1 Olea europaea HOM05D000083 ORTHO05D000196 9.6e-06 53.5 58 53.4
PSO541G2161 Papaver somniferum HOM05D000083 ORTHO05D000196 9.6e-06 53.5 57 47.4


User provided reference genes

Program Settings