Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 1.3e-128 463.0 222 100.0
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 1.8e-122 442.6 222 95.9
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 1.2e-113 413.3 220 87.7
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 5.9e-89 331.3 218 71.1
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 7.9e-86 320.9 213 69.0
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 3.9e-85 318.5 218 68.3
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 3.3e-84 315.5 243 67.5
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 7.4e-84 314.3 215 69.3
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 2.2e-83 312.8 218 66.1
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 2.2e-83 312.8 213 69.0
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 2.0e-81 306.2 217 67.3
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 3.5e-81 305.4 212 68.9
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 4.5e-81 305.1 212 66.5
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 1.7e-80 303.1 212 68.4
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 1.7e-80 303.1 212 64.6
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 1.7e-80 303.1 225 64.4
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 6.5e-80 301.2 222 62.2
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 8.5e-80 300.8 208 69.2
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 1.9e-79 299.7 222 62.2
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 1.9e-79 299.7 222 62.2
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 7.2e-79 297.7 210 64.8
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 7.2e-79 297.7 226 63.3
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 1.2e-78 297.0 209 66.0
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 2.7e-78 295.8 222 63.1
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 3.6e-78 295.4 214 65.4
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 3.6e-78 295.4 218 61.9
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 1.0e-77 293.9 210 64.3
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 1.0e-77 293.9 222 64.0
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 1.4e-77 293.5 222 61.7
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 2.3e-77 292.7 225 62.7
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 2.3e-77 292.7 208 67.3
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 5.2e-77 291.6 221 62.9
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 6.7e-77 291.2 210 63.8
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 8.8e-77 290.8 209 62.7
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 1.1e-76 290.4 216 63.9
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 1.1e-76 290.4 211 66.4
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 2.0e-76 289.7 216 61.6
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 2.0e-76 289.7 217 61.8
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 2.6e-76 289.3 222 60.8
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 2.6e-76 289.3 214 64.5
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 2.6e-76 289.3 217 61.8
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 3.3e-76 288.9 216 60.2
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 4.4e-76 288.5 223 61.4
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 4.4e-76 288.5 214 64.0
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 4.4e-76 288.5 223 60.5
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 5.7e-76 288.1 224 60.7
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 7.5e-76 287.7 232 59.1
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 7.5e-76 287.7 207 62.3
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 1.3e-75 287.0 219 63.5
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 1.3e-75 287.0 216 60.2
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 1.3e-75 287.0 225 61.8
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 1.7e-75 286.6 216 60.6
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 1.7e-75 286.6 218 64.7
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 2.2e-75 286.2 219 63.0
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 2.2e-75 286.2 216 59.3
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 4.8e-75 285.0 213 63.8
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 1.4e-74 283.5 214 62.6
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 3.1e-74 282.3 209 63.2
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 3.1e-74 282.3 227 60.8
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 5.3e-74 281.6 220 60.9
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 9.1e-74 280.8 221 57.9
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 7.7e-73 277.7 207 62.3
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 1.3e-72 276.9 209 59.8
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 1.3e-72 276.9 209 59.8
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 1.3e-72 276.9 212 63.7
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 2.2e-72 276.2 217 59.4
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 2.9e-72 275.8 214 60.7
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 5.0e-72 275.0 213 60.1
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 1.9e-71 273.1 218 60.1
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 7.2e-71 271.2 224 55.4
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 9.4e-71 270.8 224 55.4
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 6.1e-70 268.1 218 55.5
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 8.0e-70 267.7 184 64.7
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 1.8e-69 266.5 219 56.6
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 1.5e-68 263.5 230 52.6
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 2.6e-68 262.7 212 61.3
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 2.8e-67 259.2 220 57.7
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 8.3e-67 257.7 218 57.3
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 1.4e-66 256.9 204 58.8
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 2.9e-64 249.2 194 60.3
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 1.1e-63 247.3 198 59.1
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 2.7e-62 242.7 211 56.4
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 1.0e-61 240.7 221 54.3
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 1.8e-61 240.0 159 68.6
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 3.7e-59 232.3 171 61.4
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 4.9e-59 231.9 200 57.5
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 1.1e-58 230.7 222 53.2
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 3.1e-58 229.2 202 52.5
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 2.7e-57 226.1 240 47.9
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 3.5e-57 225.7 205 54.1
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 7.7e-57 224.6 174 59.8
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 5.6e-55 218.4 209 53.1
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 1.6e-54 216.9 174 59.8
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 2.3e-53 213.0 180 58.3
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 4.0e-53 212.2 175 56.6
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 1.3e-48 197.2 161 59.0
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 3.3e-47 192.6 200 47.5
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 4.3e-47 192.2 130 69.2
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 5.6e-47 191.8 191 49.2
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 2.3e-40 169.9 108 70.4
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 1.1e-39 167.5 191 44.5
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 4.3e-39 165.6 203 42.4
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 2.7e-25 119.8 161 46.0
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 7.8e-25 118.2 86 59.3
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 1.9e-23 113.6 97 56.7
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 3.6e-22 109.4 80 63.8
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 1.2e-20 104.4 120 45.8
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 1.5e-15 87.4 94 46.8
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 4.9e-11 72.4 91 37.4
MELO3C032006.2 Cucumis melo HOM05D001831 ORTHO05D166811 2.1e-09 67.0 30 100.0


User provided reference genes

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