Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 2.6e-83 312.0 159 100.0
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 2.5e-81 305.4 159 96.9
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.1e-76 290.0 159 88.7
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 4.1e-76 288.1 159 88.7
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.4e-71 273.1 154 87.0
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 1.4e-71 273.1 155 84.5
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.4e-71 273.1 155 85.2
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.0e-71 271.9 154 87.0
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.0e-71 271.6 154 85.7
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.2e-71 271.2 153 86.3
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 5.2e-71 271.2 153 86.3
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 1.2e-70 270.0 155 83.9
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.0e-70 269.2 154 86.4
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 2.6e-70 268.9 155 85.8
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.4e-70 268.1 154 85.7
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 4.4e-70 268.1 158 82.9
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 5.7e-70 267.7 155 83.2
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 9.8e-70 266.9 157 82.2
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 1.3e-69 266.5 158 81.0
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.3e-69 266.5 155 83.2
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 1.3e-69 266.5 158 81.6
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 2.2e-69 265.8 158 82.9
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 2.2e-69 265.8 158 81.6
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 3.7e-69 265.0 159 82.4
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 3.7e-69 265.0 154 84.4
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 3.7e-69 265.0 155 83.2
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 6.3e-69 264.2 154 84.4
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 8.3e-69 263.8 157 82.2
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 8.3e-69 263.8 157 82.2
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 8.3e-69 263.8 155 81.9
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.3e-69 263.8 155 81.9
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.3e-69 263.8 155 81.9
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.3e-69 263.8 155 81.9
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.3e-69 263.8 155 81.9
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.3e-69 263.8 155 81.9
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 8.3e-69 263.8 158 79.1
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.1e-68 263.5 159 79.9
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.1e-68 263.5 159 81.8
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 1.1e-68 263.5 159 79.2
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.1e-68 263.5 154 84.4
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.4e-68 263.1 155 83.2
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 1.8e-68 262.7 157 82.2
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 3.1e-68 261.9 159 80.5
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 4.1e-68 261.5 154 83.1
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 9.1e-68 260.4 249 59.8
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 1.2e-67 260.0 154 83.1
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 1.6e-67 259.6 154 81.2
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.6e-67 259.6 154 81.2
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 2.7e-67 258.8 155 80.6
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 4.5e-67 258.1 158 79.7
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.0e-66 256.9 154 82.5
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.0e-66 256.9 154 81.2
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 5.0e-66 254.6 154 78.6
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 5.0e-66 254.6 154 78.6
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 5.0e-66 254.6 154 79.9
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.0e-66 254.6 154 81.2
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 6.5e-66 254.2 159 78.0
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 8.5e-66 253.8 151 80.1
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.9e-65 252.7 154 79.2
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.9e-65 252.7 154 81.8
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.9e-65 252.7 154 81.2
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.9e-65 252.7 158 76.6
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.5e-65 252.3 138 89.9
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 3.2e-65 251.9 151 79.5
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 3.2e-65 251.9 155 78.7
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 4.2e-65 251.5 158 77.8
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 5.5e-65 251.1 154 78.6
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.2e-64 250.0 158 79.1
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.1e-64 249.2 158 79.1
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 2.7e-64 248.8 154 80.5
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 2.7e-64 248.8 159 75.5
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 3.6e-64 248.4 158 74.7
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 6.1e-64 247.7 155 76.1
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 8.0e-64 247.3 158 75.3
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 1.8e-63 246.1 151 80.1
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 2.3e-63 245.7 154 79.2
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 2.3e-63 245.7 154 79.2
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 3.0e-63 245.4 159 73.0
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 3.0e-63 245.4 154 78.6
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 4.0e-63 245.0 158 75.3
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 5.2e-63 244.6 153 77.8
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 6.8e-63 244.2 154 76.6
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 8.8e-63 243.8 159 74.8
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.5e-62 243.0 153 74.5
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 2.0e-62 242.7 157 76.4
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 2.6e-62 242.3 158 75.9
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 2.6e-62 242.3 158 75.9
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 2.6e-62 242.3 153 77.1
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 2.6e-62 242.3 153 77.1
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 5.7e-62 241.1 155 73.5
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 9.8e-62 240.4 158 72.8
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 9.8e-62 240.4 158 74.7
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 9.8e-62 240.4 158 72.2
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 1.3e-61 240.0 158 72.2
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.7e-61 239.6 158 72.2
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.7e-61 239.6 207 61.8
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 3.7e-61 238.4 158 72.2
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 6.3e-61 237.7 158 74.1
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 7.0e-60 234.2 158 70.3
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.2e-59 233.4 159 71.1
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.2e-59 233.4 159 71.1
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.2e-59 233.4 159 71.1
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.2e-59 233.4 159 71.1
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.2e-59 233.4 159 71.1
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 3.5e-59 231.9 155 71.0
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 5.9e-59 231.1 155 71.0
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 1.3e-58 229.9 155 70.3
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 1.7e-58 229.6 155 70.3
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 1.7e-58 229.6 155 70.3
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 1.7e-58 229.6 155 70.3
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 3.8e-58 228.4 135 82.2
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 5.0e-58 228.0 142 76.8
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 1.2e-56 223.4 154 68.2
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 5.2e-55 218.0 154 67.5
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 1.5e-54 216.5 144 72.2
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.0e-54 216.1 143 72.0
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 3.4e-54 215.3 123 84.6
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.7e-53 213.0 125 84.0
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.7e-51 205.7 156 64.7
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 4.6e-51 204.9 144 65.3
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.9e-50 202.2 157 63.7
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 6.8e-47 191.0 154 61.7
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 8.9e-47 190.7 207 49.8
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.2e-46 190.3 123 74.8
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 2.6e-46 189.1 111 80.2
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 3.4e-46 188.7 187 52.4
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 7.5e-46 187.6 302 41.1
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 3.9e-42 175.3 138 65.2
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 9.8e-38 160.6 99 81.8
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 2.9e-37 159.1 111 71.2
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 3.5e-35 152.1 156 50.6
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 8.6e-34 147.5 133 55.6
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 1.2e-32 143.7 99 70.7
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.0e-30 136.3 149 48.3
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.4e-30 135.6 149 48.3
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 1.7e-29 133.3 157 43.9
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 1.2e-27 127.1 77 75.3
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.5e-27 125.6 132 50.0
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 5.1e-26 121.7 146 50.7
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.3e-25 119.0 138 44.2
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.1e-24 116.3 100 60.0
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.1e-24 116.3 100 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 3.6e-24 115.5 146 43.8
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 2.4e-23 112.8 65 80.0
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.1e-23 112.5 65 80.0
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 6.8e-23 111.3 85 62.4
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 6.8e-23 111.3 138 42.8
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-22 109.8 84 65.5
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.9e-21 105.9 84 63.1
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 5.1e-18 95.1 101 54.5
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 2.8e-16 89.4 78 59.0
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 1.7e-10 70.1 53 64.2
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 5.1e-10 68.6 53 62.3
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 4.3e-09 65.5 146 36.3
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 4.8e-08 62.0 44 70.5


User provided reference genes

Program Settings