Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 9.8e-128 460.3 260 100.0
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 1.6e-101 373.2 219 97.3
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 2.5e-99 365.9 219 94.1
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 4.6e-85 318.5 201 84.6
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 1.3e-66 257.3 205 67.3
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 1.7e-63 246.9 211 67.3
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.9e-63 246.1 222 64.0
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 1.1e-62 244.2 208 65.4
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 1.4e-62 243.8 206 66.5
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 3.2e-62 242.7 201 65.2
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 4.2e-62 242.3 205 61.5
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 4.2e-62 242.3 205 61.5
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 4.2e-62 242.3 186 69.4
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 7.2e-62 241.5 201 65.7
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 9.4e-62 241.1 202 66.3
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 1.8e-60 236.9 200 65.5
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 2.3e-60 236.5 220 59.5
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 3.0e-60 236.1 197 66.0
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 3.9e-60 235.7 222 58.1
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 5.1e-60 235.3 206 64.1
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 6.7e-60 235.0 205 67.3
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 6.7e-60 235.0 204 63.2
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 1.1e-59 234.2 175 70.9
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 1.5e-59 233.8 197 65.5
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 3.3e-59 232.6 188 65.4
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 3.3e-59 232.6 188 65.4
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 3.3e-59 232.6 188 65.4
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 3.3e-59 232.6 193 63.2
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 5.7e-59 231.9 216 63.4
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.3e-58 230.7 187 64.7
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 1.3e-58 230.7 205 64.4
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.7e-58 230.3 224 66.5
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 1.7e-58 230.3 189 67.7
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 2.8e-58 229.6 189 66.7
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 2.8e-58 229.6 203 60.1
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 3.7e-58 229.2 207 65.2
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 4.8e-58 228.8 224 64.3
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 4.8e-58 228.8 206 65.5
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 8.2e-58 228.0 183 66.7
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 1.1e-57 227.6 211 66.8
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 3.1e-57 226.1 229 58.1
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 4.1e-57 225.7 222 64.4
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 4.1e-57 225.7 209 61.7
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 6.9e-57 224.9 188 63.3
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 6.9e-57 224.9 201 63.2
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 1.5e-56 223.8 195 65.6
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 5.9e-56 221.9 189 63.5
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 7.7e-56 221.5 186 63.4
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 1.7e-55 220.3 186 63.4
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 1.7e-55 220.3 183 61.2
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 6.5e-55 218.4 211 62.6
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 1.1e-54 217.6 182 65.9
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 1.4e-54 217.2 191 60.2
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.6e-53 213.8 187 62.0
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 2.1e-53 213.4 189 63.0
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 2.7e-53 213.0 190 63.7
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 3.6e-53 212.6 192 62.0
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 4.7e-53 212.2 219 59.4
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 4.7e-53 212.2 194 61.9
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 1.4e-52 210.7 190 62.1
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.3e-52 209.9 219 62.1
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 6.7e-52 208.4 224 53.1
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 8.8e-52 208.0 190 60.5
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 2.6e-51 206.5 191 60.7
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 3.3e-51 206.1 189 60.8
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 7.4e-51 204.9 190 60.0
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 7.4e-51 204.9 190 60.0
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 1.3e-50 204.1 206 57.8
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 2.2e-50 203.4 189 59.8
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 2.2e-50 203.4 189 59.8
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 2.2e-50 203.4 196 55.6
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 2.8e-50 203.0 200 58.5
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 4.8e-50 202.2 204 59.8
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.1e-49 201.1 181 64.1
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 2.4e-49 199.9 191 60.7
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 4.1e-49 199.1 191 57.6
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 7.0e-49 198.4 195 57.9
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 1.2e-48 197.6 191 56.0
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 2.0e-48 196.8 202 56.9
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 2.9e-47 193.0 195 55.9
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 1.6e-45 187.2 191 55.0
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 2.1e-45 186.8 188 56.4
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 1.4e-44 184.1 159 62.9
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 2.0e-43 180.3 184 54.9
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 7.5e-43 178.3 207 56.0
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 1.1e-41 174.5 123 73.2
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 9.1e-41 171.4 184 54.9
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 1.6e-40 170.6 190 52.1
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 6.5e-39 165.2 190 52.1
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 6.5e-39 165.2 188 50.5
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 1.6e-37 160.6 187 49.7
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 8.0e-37 158.3 187 48.7
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 1.4e-36 157.5 163 55.8
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 2.3e-36 156.8 187 50.3
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 5.7e-35 152.1 127 65.4
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 6.3e-34 148.7 204 53.9
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 9.1e-33 144.8 142 54.9
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 2.7e-32 143.3 207 51.7
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 7.7e-32 141.7 118 76.3
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 7.7e-32 141.7 118 76.3
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 2.9e-31 139.8 184 48.4
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 1.8e-28 130.6 213 40.8
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 1.7e-26 124.0 223 37.7
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.2e-26 123.6 110 71.8
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 4.9e-26 122.5 189 45.5
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 7.0e-25 118.6 184 39.7
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 1.2e-24 117.9 184 39.7
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.0e-23 114.8 108 61.1
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 1.5e-22 110.9 201 37.3
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 1.8e-20 104.0 160 43.1
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 3.4e-19 99.8 186 36.0
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.2e-18 97.1 101 59.4
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 2.9e-18 96.7 167 39.5
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 5.4e-17 92.4 201 36.8
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 4.0e-12 76.3 137 38.0
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.5e-11 74.3 71 53.5
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 2.2e-10 70.5 123 39.0
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 9.2e-09 65.1 108 38.0


User provided reference genes

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